Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2590

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10957 and 10958 are separated by 505 nucleotides10958 and 10959 are separated by 404 nucleotides mRNA_2589: 10957 - Hypothetical Protein, at 547,993 to 548,642 10957 mRNA_2590: 10958 - Hypothetical Protein, at 549,148 to 549,789 10958 mRNA_2591: 10959 - Hypothetical Protein, at 550,194 to 551,919 10959

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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548,254 + 10957 mRNA_2589 0.40 +1.0
548,370 - 10957 mRNA_2589 0.58 -0.9
548,488 - 10957 mRNA_2589 0.76 +2.7
548,768 + -0.6
548,928 - +1.9
548,997 + +0.6
549,072 + -0.1
549,099 + -0.1
549,113 + -0.8
549,225 - 10958 mRNA_2590 0.12 +0.3
549,239 + 10958 mRNA_2590 0.14 +0.6
549,287 + 10958 mRNA_2590 0.22 -0.3
549,299 + 10958 mRNA_2590 0.24 -0.2
549,349 + 10958 mRNA_2590 0.31 -1.8
549,352 + 10958 mRNA_2590 0.32 -0.5
549,360 + 10958 mRNA_2590 0.33 -0.4
549,365 - 10958 mRNA_2590 0.34 -0.3
549,370 + 10958 mRNA_2590 0.35 +2.1
549,373 + 10958 mRNA_2590 0.35 -0.3
549,374 + 10958 mRNA_2590 0.35 +0.4
549,375 - 10958 mRNA_2590 0.35 +1.4
549,378 - 10958 mRNA_2590 0.36 -0.7
549,382 + 10958 mRNA_2590 0.36 +0.5
549,383 + 10958 mRNA_2590 0.37 -0.2
549,385 - 10958 mRNA_2590 0.37 +0.1
549,386 + 10958 mRNA_2590 0.37 -1.0
549,391 + 10958 mRNA_2590 0.38 -0.0
549,398 - 10958 mRNA_2590 0.39 +0.1
549,400 + 10958 mRNA_2590 0.39 +0.7
549,402 - 10958 mRNA_2590 0.40 -1.4
549,406 + 10958 mRNA_2590 0.40 +0.5
549,412 + 10958 mRNA_2590 0.41 +0.9
549,412 + 10958 mRNA_2590 0.41 -0.2
549,414 + 10958 mRNA_2590 0.41 -0.8
549,422 + 10958 mRNA_2590 0.43 -0.1
549,429 - 10958 mRNA_2590 0.44 -0.7
549,435 + 10958 mRNA_2590 0.45 +0.0
549,435 + 10958 mRNA_2590 0.45 -0.5
549,437 + 10958 mRNA_2590 0.45 +0.6
549,439 - 10958 mRNA_2590 0.45 -1.1
549,441 - 10958 mRNA_2590 0.46 -0.5
549,442 + 10958 mRNA_2590 0.46 +1.0
549,443 - 10958 mRNA_2590 0.46 +0.6
549,447 + 10958 mRNA_2590 0.47 +1.2
549,448 + 10958 mRNA_2590 0.47 -0.0
549,448 - 10958 mRNA_2590 0.47 -2.3
549,449 + 10958 mRNA_2590 0.47 +0.7
549,449 - 10958 mRNA_2590 0.47 +1.9
549,461 + 10958 mRNA_2590 0.49 -0.2
549,469 + 10958 mRNA_2590 0.50 +0.4
549,469 + 10958 mRNA_2590 0.50 -0.7
549,470 + 10958 mRNA_2590 0.50 +0.5
549,478 + 10958 mRNA_2590 0.51 -0.6
549,479 + 10958 mRNA_2590 0.52 -0.6
549,490 + 10958 mRNA_2590 0.53 -0.3
549,508 - 10958 mRNA_2590 0.56 +0.1
549,517 - 10958 mRNA_2590 0.57 +0.0
549,533 + 10958 mRNA_2590 0.60 +0.3
549,543 + 10958 mRNA_2590 0.62 -0.5
549,555 + 10958 mRNA_2590 0.63 +0.0
549,574 - 10958 mRNA_2590 0.66 +0.3
549,574 - 10958 mRNA_2590 0.66 -0.9
549,575 + 10958 mRNA_2590 0.67 +0.9
549,577 - 10958 mRNA_2590 0.67 -0.5
549,578 - 10958 mRNA_2590 0.67 +1.2
549,581 - 10958 mRNA_2590 0.67 -0.9
549,583 - 10958 mRNA_2590 0.68 -0.0
549,587 - 10958 mRNA_2590 0.68 +0.5
549,588 + 10958 mRNA_2590 0.69 +0.5
549,593 - 10958 mRNA_2590 0.69 -0.8
549,593 + 10958 mRNA_2590 0.69 -1.2
549,594 - 10958 mRNA_2590 0.69 -0.1
549,595 - 10958 mRNA_2590 0.70 +1.6
549,596 + 10958 mRNA_2590 0.70 +0.8
549,600 + 10958 mRNA_2590 0.70 +0.0
549,600 + 10958 mRNA_2590 0.70 -0.1
549,605 - 10958 mRNA_2590 0.71 -0.4
549,606 + 10958 mRNA_2590 0.71 +0.8
549,607 + 10958 mRNA_2590 0.71 -0.3
549,612 + 10958 mRNA_2590 0.72 -0.5
549,614 + 10958 mRNA_2590 0.73 -0.2
549,629 - 10958 mRNA_2590 0.75 -0.4
549,632 + 10958 mRNA_2590 0.75 -1.2
549,639 + 10958 mRNA_2590 0.76 +0.4
549,640 - 10958 mRNA_2590 0.77 -0.2
549,649 + 10958 mRNA_2590 0.78 +0.4
549,651 - 10958 mRNA_2590 0.78 -1.5
549,654 - 10958 mRNA_2590 0.79 +1.6
549,655 + 10958 mRNA_2590 0.79 +0.3
549,656 + 10958 mRNA_2590 0.79 -0.3
549,657 + 10958 mRNA_2590 0.79 +0.0
549,661 + 10958 mRNA_2590 0.80 +1.4
549,661 - 10958 mRNA_2590 0.80 +0.9
549,665 - 10958 mRNA_2590 0.81 -0.8
549,665 - 10958 mRNA_2590 0.81 -0.6
549,668 - 10958 mRNA_2590 0.81 -0.1
549,669 + 10958 mRNA_2590 0.81 +0.5
549,675 - 10958 mRNA_2590 0.82 +0.7
549,677 - 10958 mRNA_2590 0.82 -0.1
549,678 - 10958 mRNA_2590 0.83 -0.2
549,680 + 10958 mRNA_2590 0.83 +1.0
549,685 + 10958 mRNA_2590 0.84 -0.4
549,685 + 10958 mRNA_2590 0.84 +0.9
549,691 + 10958 mRNA_2590 0.85 +1.4
549,704 - 10958 mRNA_2590 0.87 -1.2
549,706 + 10958 mRNA_2590 0.87 +0.5
549,710 - 10958 mRNA_2590 0.88 +1.0
549,715 - 10958 mRNA_2590 0.88 +0.2
549,716 + 10958 mRNA_2590 0.88 +0.3
549,761 + -0.9
549,818 - -0.6
549,819 + +0.7
549,821 - -0.4
549,825 - +0.3
549,829 + +1.9
549,830 - +0.8
549,837 + -1.0
549,841 + -0.8
549,846 + +0.6
549,849 - -0.1
549,850 + -0.2
549,859 + +1.9
549,885 - +0.3
549,894 + +1.0
549,957 - -1.1
550,012 + +0.9
550,020 - -0.4
550,033 - +0.5
550,033 + -0.5
550,034 + -0.7
550,290 - -0.8
550,316 - +0.0
550,323 - +0.4
550,324 - +0.2
550,440 - 10959 mRNA_2591 0.14 +0.7
550,470 + 10959 mRNA_2591 0.16 +1.5
550,614 - 10959 mRNA_2591 0.24 +0.6

Or see this region's nucleotide sequence