Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2617

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10984 and 10985 are separated by 486 nucleotides10985 and 10986 are separated by 101 nucleotides mRNA_2616: 10984 - KOG4076 Regulator of ATP-sensitive K+ channels Alpha-endosulfine/ARPP-19 and related cAMP-regulated phosphoproteins, at 604,328 to 604,979 10984 mRNA_2617: 10985 - HMMPfam-Carbonic anhydrase-PF00484,SMART-Carbonic anhydrase-SM00947,SUPERFAMILY--SSF53056, at 605,466 to 606,411 10985 mRNA_2618: 10986 - Hypothetical Protein, at 606,513 to 607,761 10986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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604,542 - 10984 mRNA_2616 0.33 +1.2
604,663 - 10984 mRNA_2616 0.51 +2.4
604,703 - 10984 mRNA_2616 0.58 -0.7
604,716 + 10984 mRNA_2616 0.60 +0.5
604,891 + 10984 mRNA_2616 0.86 -0.2
604,960 + +0.3
604,984 - -0.7
605,013 - -0.7
605,027 - +1.3
605,029 + +2.6
605,030 - +0.7
605,153 - -0.3
605,163 - +2.4
605,166 + +0.0
605,169 - +0.6
605,177 - -0.3
605,182 + +0.3
605,183 + +0.8
605,213 + -0.3
605,314 + +1.3
605,314 + -0.1
605,317 + +0.9
605,750 + 10985 mRNA_2617 0.30 -0.1
605,920 - 10985 mRNA_2617 0.48 +1.7
606,018 + 10985 mRNA_2617 0.58 +0.1
606,274 - 10985 mRNA_2617 0.85 +0.2
606,780 + 10986 mRNA_2618 0.21 +0.6

Or see this region's nucleotide sequence