Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2619

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10986 and 10987 are separated by 482 nucleotides10987 and 10988 are separated by 543 nucleotides mRNA_2618: 10986 - Hypothetical Protein, at 606,513 to 607,761 10986 mRNA_2619: 10987 - Hypothetical Protein, at 608,244 to 608,759 10987 mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609,303 to 611,052 10988

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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607,790 + +1.3
607,799 - +0.5
607,912 - +1.4
607,913 - +0.8
607,928 + +1.7
608,061 + +1.0
608,070 + -0.1
608,071 - -2.1
608,077 + -1.3
608,081 + +0.2
608,088 + +1.0
608,088 + -1.9
608,217 - +1.6
608,233 + +1.6
608,388 + 10987 mRNA_2619 0.28 +0.8
608,396 - 10987 mRNA_2619 0.29 -1.1
608,484 - 10987 mRNA_2619 0.47 -0.2
608,486 - 10987 mRNA_2619 0.47 +0.3
608,486 + 10987 mRNA_2619 0.47 +1.3
608,511 - 10987 mRNA_2619 0.52 +0.9
608,516 - 10987 mRNA_2619 0.53 -0.0
608,655 - 10987 mRNA_2619 0.80 +1.8
608,658 - 10987 mRNA_2619 0.80 +2.0
608,663 - 10987 mRNA_2619 0.81 +0.9
608,673 + 10987 mRNA_2619 0.83 +0.9
608,688 - 10987 mRNA_2619 0.86 -0.1
608,787 + -0.7
608,794 - +0.9
608,795 + +0.5
608,804 - +1.2
608,819 + -0.8
608,837 - +0.3
608,913 + +0.4
608,936 - +2.0
608,942 - +0.3
608,945 - +1.3
608,946 - +1.7
608,947 + +0.1
608,950 - -0.2
608,952 - -0.7
608,953 - -0.1
608,953 + -0.1
608,954 - +0.5
608,958 - +0.7
608,968 + +0.9
609,004 + +0.1
609,014 + -0.0
609,030 + +0.1
609,031 + +1.6
609,069 + +0.5
609,073 + -0.2
609,109 + -0.4
609,209 + +1.3
609,213 - -0.6
609,240 + -1.4
609,250 + +1.6
609,253 + +2.1
609,257 + +0.5
609,263 - -0.5
609,265 - -1.3
609,276 + -0.3
609,366 + +0.7
609,367 - -0.6
609,371 - +0.1
609,379 + +0.2
609,380 - -0.5
609,380 - +1.4
609,382 + -0.0
609,384 - -0.3
609,385 + +1.0
609,399 - +0.3
609,405 - -0.0
609,407 - +0.1
609,416 + +1.0
609,416 - -1.0
609,448 + +2.3
609,526 - 10988 mRNA_2620 0.13 +0.2
609,528 + 10988 mRNA_2620 0.13 +0.4
609,537 - 10988 mRNA_2620 0.13 +0.9
609,540 + 10988 mRNA_2620 0.14 +1.1
609,546 - 10988 mRNA_2620 0.14 -1.8
609,548 + 10988 mRNA_2620 0.14 +0.9
609,548 - 10988 mRNA_2620 0.14 +0.7
609,550 + 10988 mRNA_2620 0.14 +0.1
609,562 + 10988 mRNA_2620 0.15 +1.4
609,562 + 10988 mRNA_2620 0.15 -0.1
609,563 + 10988 mRNA_2620 0.15 +0.1
609,565 + 10988 mRNA_2620 0.15 +0.2
609,567 + 10988 mRNA_2620 0.15 -0.0
609,573 - 10988 mRNA_2620 0.15 +1.7
609,577 + 10988 mRNA_2620 0.16 +1.4
609,593 + 10988 mRNA_2620 0.17 +0.4
609,679 + 10988 mRNA_2620 0.21 +0.9
609,688 - 10988 mRNA_2620 0.22 +0.4
609,691 + 10988 mRNA_2620 0.22 +3.8
609,694 + 10988 mRNA_2620 0.22 +0.1
609,701 - 10988 mRNA_2620 0.23 -0.4
609,704 - 10988 mRNA_2620 0.23 +0.7
609,721 - 10988 mRNA_2620 0.24 +1.2
609,725 + 10988 mRNA_2620 0.24 +1.1

Or see this region's nucleotide sequence