Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2620

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10987 and 10988 are separated by 543 nucleotides10988 and 10989 are separated by 338 nucleotides mRNA_2619: 10987 - Hypothetical Protein, at 608,244 to 608,759 10987 mRNA_2620: 10988 - ProSiteProfiles-Filamin/ABP280 repeat profile.-PS50194,SUPERFAMILY--SSF81296, at 609,303 to 611,052 10988 mRNA_2621: 10989 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 611,391 to 613,373 10989

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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608,388 + 10987 mRNA_2619 0.28 +0.8
608,396 - 10987 mRNA_2619 0.29 -1.1
608,484 - 10987 mRNA_2619 0.47 -0.2
608,486 - 10987 mRNA_2619 0.47 +0.3
608,486 + 10987 mRNA_2619 0.47 +1.3
608,511 - 10987 mRNA_2619 0.52 +0.9
608,516 - 10987 mRNA_2619 0.53 -0.0
608,655 - 10987 mRNA_2619 0.80 +1.8
608,658 - 10987 mRNA_2619 0.80 +2.0
608,663 - 10987 mRNA_2619 0.81 +0.9
608,673 + 10987 mRNA_2619 0.83 +0.9
608,688 - 10987 mRNA_2619 0.86 -0.1
608,787 + -0.7
608,794 - +0.9
608,795 + +0.5
608,804 - +1.2
608,819 + -0.8
608,837 - +0.3
608,913 + +0.4
608,936 - +2.0
608,942 - +0.3
608,945 - +1.3
608,946 - +1.7
608,947 + +0.1
608,950 - -0.2
608,952 - -0.7
608,953 - -0.1
608,953 + -0.1
608,954 - +0.5
608,958 - +0.7
608,968 + +0.9
609,004 + +0.1
609,014 + -0.0
609,030 + +0.1
609,031 + +1.6
609,069 + +0.5
609,073 + -0.2
609,109 + -0.4
609,209 + +1.3
609,213 - -0.6
609,240 + -1.4
609,250 + +1.6
609,253 + +2.1
609,257 + +0.5
609,263 - -0.5
609,265 - -1.3
609,276 + -0.3
609,366 + +0.7
609,367 - -0.6
609,371 - +0.1
609,379 + +0.2
609,380 - -0.5
609,380 - +1.4
609,382 + -0.0
609,384 - -0.3
609,385 + +1.0
609,399 - +0.3
609,405 - -0.0
609,407 - +0.1
609,416 + +1.0
609,416 - -1.0
609,448 + +2.3
609,526 - 10988 mRNA_2620 0.13 +0.2
609,528 + 10988 mRNA_2620 0.13 +0.4
609,537 - 10988 mRNA_2620 0.13 +0.9
609,540 + 10988 mRNA_2620 0.14 +1.1
609,546 - 10988 mRNA_2620 0.14 -1.8
609,548 + 10988 mRNA_2620 0.14 +0.9
609,548 - 10988 mRNA_2620 0.14 +0.7
609,550 + 10988 mRNA_2620 0.14 +0.1
609,562 + 10988 mRNA_2620 0.15 +1.4
609,562 + 10988 mRNA_2620 0.15 -0.1
609,563 + 10988 mRNA_2620 0.15 +0.1
609,565 + 10988 mRNA_2620 0.15 +0.2
609,567 + 10988 mRNA_2620 0.15 -0.0
609,573 - 10988 mRNA_2620 0.15 +1.7
609,577 + 10988 mRNA_2620 0.16 +1.4
609,593 + 10988 mRNA_2620 0.17 +0.4
609,679 + 10988 mRNA_2620 0.21 +0.9
609,688 - 10988 mRNA_2620 0.22 +0.4
609,691 + 10988 mRNA_2620 0.22 +3.8
609,694 + 10988 mRNA_2620 0.22 +0.1
609,701 - 10988 mRNA_2620 0.23 -0.4
609,704 - 10988 mRNA_2620 0.23 +0.7
609,721 - 10988 mRNA_2620 0.24 +1.2
609,725 + 10988 mRNA_2620 0.24 +1.1
609,771 + 10988 mRNA_2620 0.27 +1.7
609,838 + 10988 mRNA_2620 0.31 -0.1
609,858 + 10988 mRNA_2620 0.32 +0.2
610,005 - 10988 mRNA_2620 0.40 +0.3
610,134 - 10988 mRNA_2620 0.47 -0.1
610,161 - 10988 mRNA_2620 0.49 +1.7
610,424 - 10988 mRNA_2620 0.64 -0.3
610,453 - 10988 mRNA_2620 0.66 +0.7
610,570 - 10988 mRNA_2620 0.72 +1.1
610,864 + 10988 mRNA_2620 0.89 -1.5
610,881 - +0.9
610,885 + +0.7
610,901 - -0.6
611,012 - -0.1
611,025 + +0.7
611,106 + +0.9
611,132 - -0.5
611,143 - -0.4
611,153 - -0.0
611,153 - +0.8
611,153 - -1.7
611,162 + +0.3
611,164 - +0.1
611,165 + +0.4
611,166 + +0.6
611,180 + -1.0
611,182 - -1.0
611,182 + +0.2
611,183 - +2.0
611,184 - -0.0
611,184 - +0.6
611,184 - -0.9
611,190 - +0.5
611,194 + -0.2
611,199 + +0.7
611,199 + +0.2
611,209 + +0.3
611,209 + +0.2
611,210 + -0.9
611,210 + +1.5
611,210 - +0.5
611,211 + -0.3
611,245 + +2.0
611,246 - -1.4
611,246 - +0.9
611,252 + +3.2
611,254 + +0.2
611,263 + +1.6
611,265 + +0.8
611,300 - +0.4
611,302 - +0.8
611,314 + -0.7
611,314 - -1.2
611,316 - -0.2
611,320 - +0.7
611,330 + +1.6
611,332 + +0.1
611,334 + -1.0
611,338 - +2.3
611,341 - -0.1
611,355 - +0.6
611,363 + -0.4
611,455 - +0.8
611,476 + +1.9
611,612 + 10989 mRNA_2621 0.11 -0.1
611,614 - 10989 mRNA_2621 0.11 +0.2
611,632 - 10989 mRNA_2621 0.12 -0.3
611,632 - 10989 mRNA_2621 0.12 -0.6
611,682 - 10989 mRNA_2621 0.15 +0.8
611,746 - 10989 mRNA_2621 0.18 +0.1
611,748 - 10989 mRNA_2621 0.18 +1.8
611,749 - 10989 mRNA_2621 0.18 +0.0
611,773 + 10989 mRNA_2621 0.19 +1.0
611,792 + 10989 mRNA_2621 0.20 +1.8
611,793 - 10989 mRNA_2621 0.20 +1.0
611,805 - 10989 mRNA_2621 0.21 +0.2
611,812 + 10989 mRNA_2621 0.21 -0.3
611,819 - 10989 mRNA_2621 0.22 +1.1
611,848 + 10989 mRNA_2621 0.23 -0.0
611,891 - 10989 mRNA_2621 0.25 +0.2
611,906 - 10989 mRNA_2621 0.26 +0.6
611,929 - 10989 mRNA_2621 0.27 +0.8
611,982 + 10989 mRNA_2621 0.30 +1.3
612,051 - 10989 mRNA_2621 0.33 +2.0

Or see this region's nucleotide sequence