Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2631

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10998 and 10999 are separated by 476 nucleotides mRNA_2630: 10998 - KOG1581 UDP-galactose transporter related protein, at 629,452 to 632,288 10998 mRNA_2631: 10999 - K14803 PTC2_3 protein phosphatase PTC2/3, at 632,765 to 634,825 10999

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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631,782 + 10998 mRNA_2630 0.82 -0.3
631,877 + 10998 mRNA_2630 0.85 -0.0
631,898 - 10998 mRNA_2630 0.86 +1.9
631,935 - 10998 mRNA_2630 0.88 +0.2
632,336 - +0.8
632,340 + -0.4
632,349 - -3.1
632,383 + +0.5
632,474 - +0.4
632,477 - -0.3
632,732 - +1.6
632,735 - -0.8
632,736 + -1.2
633,064 + 10999 mRNA_2631 0.15 +0.9
633,084 + 10999 mRNA_2631 0.15 -0.7
633,543 - 10999 mRNA_2631 0.38 -0.7
633,649 + 10999 mRNA_2631 0.43 +0.7
633,660 - 10999 mRNA_2631 0.43 -0.5
633,699 - 10999 mRNA_2631 0.45 -0.6
634,194 + 10999 mRNA_2631 0.69 -1.2
634,229 - 10999 mRNA_2631 0.71 +1.4
634,229 - 10999 mRNA_2631 0.71 -0.4
634,251 + 10999 mRNA_2631 0.72 -0.3
634,487 - 10999 mRNA_2631 0.84 +0.7
634,532 - 10999 mRNA_2631 0.86 -1.5
634,549 + 10999 mRNA_2631 0.87 +0.7
634,563 + 10999 mRNA_2631 0.87 +0.9
634,688 - -1.5
634,689 + -0.7
634,697 + -0.7
634,826 + +0.9
634,830 - -0.2
634,835 + -0.7
634,993 - +0.0
634,994 - +1.1
634,995 - +0.4
634,996 + +0.2
635,003 + +0.7
635,013 + +0.9
635,018 + +1.2
635,024 + -0.4
635,024 + -0.9
635,033 - +0.4
635,034 - -0.8
635,288 + -0.0
635,445 + +1.2
635,468 - +0.8
635,733 - +1.0
635,736 - +0.3

Or see this region's nucleotide sequence