Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2639

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11006 and 11007 are separated by 839 nucleotides11007 and 11008 are separated by 920 nucleotides mRNA_2638: 11006 - SMART-heat shock factor-SM00415, at 650,946 to 653,673 11006 mRNA_2639: 11007 - HMMPfam-Glycosyl hydrolase family 26-PF02156,SUPERFAMILY--SSF51445, at 654,513 to 656,042 11007 mRNA_2640: 11008 - Hypothetical Protein, at 656,963 to 657,920 11008

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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653,580 + -1.1
653,757 - +1.9
653,899 - +0.0
653,900 + +0.2
653,904 - +0.3
654,036 + +0.8
654,325 - +0.4
654,327 - +0.2
654,330 - -0.8
654,346 + +0.7
654,353 - +0.0
654,379 + -0.7
654,385 - +0.5
654,387 + +1.4
654,389 + -0.4
654,390 + -0.4
654,392 + +0.2
654,393 - -0.6
654,393 - +0.8
654,393 + +1.5
654,394 - +0.7
654,395 - -0.1
654,396 + +2.0
654,397 + -0.2
654,398 + +0.3
654,413 - +0.7
654,414 + +0.9
654,419 + -1.5
654,427 + -0.2
654,429 - +0.8
654,698 + 11007 mRNA_2639 0.12 -0.1
654,798 + 11007 mRNA_2639 0.19 +1.6
655,132 + 11007 mRNA_2639 0.40 -1.4
655,351 + 11007 mRNA_2639 0.55 +0.5
655,560 - 11007 mRNA_2639 0.68 +0.4
655,645 - 11007 mRNA_2639 0.74 +1.4
655,663 + 11007 mRNA_2639 0.75 -0.3
655,669 - 11007 mRNA_2639 0.76 +2.3
655,832 - 11007 mRNA_2639 0.86 -0.8
655,867 + 11007 mRNA_2639 0.88 +2.0
655,882 + 11007 mRNA_2639 0.89 -0.1
655,990 - +1.8
656,142 + +0.5
656,158 + -0.1
656,161 + -0.1
656,328 + +0.5
656,329 - -0.8
656,461 + +0.3
656,573 - +0.6
656,596 + +0.6
656,606 - -2.1
656,769 - +0.1
656,882 + +0.2

Or see this region's nucleotide sequence