Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2642

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11009 and 11010 are separated by 523 nucleotides11010 and 11011 are separated by 266 nucleotides mRNA_2641: 11009 - Hypothetical Protein, at 658,203 to 659,346 11009 mRNA_2642: 11010 - K17428 MRPL47, NCM1 large subunit ribosomal protein L47, at 659,870 to 660,906 11010 mRNA_2643: 11011 - K01254 LTA4H leukotriene-A4 hydrolase, at 661,173 to 664,262 11011

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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658,943 + 11009 mRNA_2641 0.65 +0.2
659,096 + 11009 mRNA_2641 0.78 -1.0
659,765 - -0.6
659,938 + -0.3
659,960 - -0.7
660,920 - +0.7
660,931 + +0.3
661,076 + +0.6
661,086 + -0.0
661,088 - -1.0
661,158 - +0.6
661,386 - -0.0
661,696 - 11011 mRNA_2643 0.17 -1.6
661,807 - 11011 mRNA_2643 0.21 +1.3
661,821 - 11011 mRNA_2643 0.21 +0.9
661,855 + 11011 mRNA_2643 0.22 -0.0

Or see this region's nucleotide sequence