Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2664

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11031 and 11032 are separated by 752 nucleotides mRNA_2663: 11031 - Hypothetical Protein, at 707,646 to 708,293 11031 mRNA_2664: 11032 - Hypothetical Protein, at 709,046 to 711,250 11032

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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708,170 - 11031 mRNA_2663 0.81 +0.6
708,225 + 11031 mRNA_2663 0.89 +0.1
708,232 - +0.4
708,681 + +0.1
708,788 + -0.1
708,823 - +1.3
708,836 + -0.4
708,843 + +0.0
708,867 + +0.1
709,284 - 11032 mRNA_2664 0.11 +0.1
709,671 - 11032 mRNA_2664 0.28 +0.9
709,812 - 11032 mRNA_2664 0.35 -2.4
709,871 - 11032 mRNA_2664 0.37 +0.8
709,924 + 11032 mRNA_2664 0.40 +1.0
709,990 + 11032 mRNA_2664 0.43 -0.2
710,040 + 11032 mRNA_2664 0.45 +0.5
710,078 - 11032 mRNA_2664 0.47 -0.5
710,316 - 11032 mRNA_2664 0.58 +1.3
710,325 + 11032 mRNA_2664 0.58 +0.2
710,889 + 11032 mRNA_2664 0.84 +0.3
711,036 + +3.0
711,227 + -0.6
711,238 + -0.4
711,249 + -2.5
711,311 + +0.0
711,326 - +1.5
711,329 - +0.4
711,333 - -1.1
711,335 + +2.3
711,335 + -0.6
711,336 + +0.3
711,341 + -0.5
711,342 + -1.1
711,345 - +0.3
711,346 + +0.4
711,346 + -0.0
711,348 - +1.0
711,348 + -0.7
711,348 + +0.6
711,374 - +0.1
711,377 - +1.0
711,380 - -1.4
711,382 + +1.3
711,385 - +1.6
711,389 + +0.5
711,391 - +0.0
711,393 + +0.7
711,395 + +1.7
711,440 - +0.3
711,444 + +0.2
711,473 + -1.2
711,483 - +0.5
711,483 - -0.1
711,484 + +0.2
711,486 + +0.5
711,487 - -0.5
711,495 + +1.7
711,496 + -1.4
711,500 - +2.4
711,501 - +1.9
711,505 + -0.2
711,505 + +0.6
711,507 - +0.0
711,510 - +0.6
711,520 - +0.7
711,537 + +0.8
711,541 + +1.1
711,592 + -0.1
711,605 + +3.2
711,610 - +0.4
711,623 - +0.1
711,624 - +1.0
711,631 + +0.7
711,645 + -0.1
711,655 + -0.7
711,695 + +0.7
711,734 - +2.0
711,759 + +0.7
711,770 - -0.3
711,775 - +1.2
711,775 - +2.3
711,776 + +1.3
711,779 + +0.2
711,791 + -1.3
711,801 + -0.7
711,801 - +0.2
711,803 + +0.9
711,849 - +0.9
711,922 - +1.0
712,181 - -0.5
712,205 + -0.1
712,223 - +0.1

Or see this region's nucleotide sequence