Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2672

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11039 and 11040 are separated by 857 nucleotides11040 and 11041 are separated by 800 nucleotides mRNA_2671: 11039 - K00111 glpA, glpD glycerol-3-phosphate dehydrogenase, at 726,293 to 729,723 11039 mRNA_2672: 11040 - K20032 ZDHHC13_17, HIP14 palmitoyltransferase ZDHHC13/17, at 730,581 to 733,538 11040 mRNA_2673: 11041 - K10844 ERCC2, XPD DNA excision repair protein ERCC-2, at 734,339 to 738,341 11041

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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729,665 + +0.3
729,703 + +2.0
729,785 - +0.2
729,799 + +1.5
729,956 - -0.1
729,959 - +0.6
729,968 - -0.0
729,969 + +0.6
729,970 + +0.1
729,999 - +1.3
730,001 - +1.0
730,013 + +1.7
730,013 + +2.0
730,087 - +1.5
730,112 - -0.4
730,119 + -0.0
730,122 - +1.7
730,144 - +1.1
730,146 - +0.5
730,146 - +1.8
730,147 + -0.2
730,152 - +1.8
730,152 + +0.5
730,167 + +2.0
730,172 - +0.1
730,185 + +1.0
730,213 + -1.1
730,213 + +0.6
730,287 + +0.5
730,300 + -0.2
730,309 + +1.6
730,323 + +1.4
730,330 - -0.5
730,340 + +0.3
730,470 - -1.1
730,472 - +1.5
730,473 - +1.3
730,476 - +0.4
730,484 - +0.7
730,497 + +0.2
730,504 + +1.8
730,505 + -0.1
730,507 - +1.4
730,618 - +2.0
730,786 - +0.1
731,465 - 11040 mRNA_2672 0.30 -1.4
731,639 + 11040 mRNA_2672 0.36 +1.5
731,642 - 11040 mRNA_2672 0.36 +1.7
732,207 + 11040 mRNA_2672 0.55 -0.2
732,262 - 11040 mRNA_2672 0.57 +0.4
732,392 + 11040 mRNA_2672 0.61 +1.0
732,614 + 11040 mRNA_2672 0.69 -0.4
732,964 + 11040 mRNA_2672 0.81 +1.1
733,097 - 11040 mRNA_2672 0.85 +0.9
733,154 + 11040 mRNA_2672 0.87 +2.3
733,396 - +1.3
733,546 + +1.1
733,549 + +0.0
733,683 - +0.7
733,703 - +0.5
733,705 + +0.3
733,723 + +0.1
733,728 - -0.1
733,838 - +0.0
733,841 - +0.0
733,870 - -1.3
734,150 + +1.0

Or see this region's nucleotide sequence