Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2675

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2675: 11043 - HMMPfam-Putative adipose-regulatory protein (Seipin)-PF06775, at 743,974 to 745,972 11043

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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743,026 + +0.8
743,045 - +0.1
743,048 + +0.7
743,067 + -0.0
743,223 + +1.1
743,317 - -0.5
743,354 + +0.5
743,365 - +2.4
743,762 - -0.6
743,762 - +0.3
743,798 + +0.0
743,798 - -0.3
743,806 - +0.2
743,840 + +0.5
743,846 + +0.5
743,950 - +1.3
744,125 - -0.3
744,206 - 11043 mRNA_2675 0.12 +0.5
744,231 - 11043 mRNA_2675 0.13 -1.4
744,231 - 11043 mRNA_2675 0.13 -0.9
744,247 - 11043 mRNA_2675 0.14 -0.8
744,256 + 11043 mRNA_2675 0.14 +0.2
744,280 - 11043 mRNA_2675 0.15 +0.9
744,362 + 11043 mRNA_2675 0.19 +0.3
744,365 + 11043 mRNA_2675 0.20 +0.7
744,390 + 11043 mRNA_2675 0.21 -0.0
744,555 - 11043 mRNA_2675 0.29 +0.7
744,587 + 11043 mRNA_2675 0.31 +0.1
744,676 + 11043 mRNA_2675 0.35 -1.2
745,117 + 11043 mRNA_2675 0.57 -0.7
745,492 - 11043 mRNA_2675 0.76 +1.8
745,696 - 11043 mRNA_2675 0.86 +0.0
745,952 - -0.6
745,954 - +0.4
745,954 - +2.6
745,963 + +0.3
746,095 + +0.1
746,104 + +0.2
746,110 - +1.8
746,124 + +2.3
746,151 + +1.6
746,167 + +1.6
746,170 - +0.2
746,248 - +0.9
746,257 + +0.4
746,264 + +0.6
746,276 + +0.6
746,276 - +0.2
746,277 + -0.7
746,278 - +0.3
746,288 - +1.1
746,314 + +0.7

Or see this region's nucleotide sequence