Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2677

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11045 and 11046 are separated by 628 nucleotides mRNA_2677: 11045 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 756,988 to 757,590 11045 mRNA_2678: 11046 - KOG3102 Uncharacterized conserved protein, at 758,219 to 759,317 11046

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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756,328 - +0.7
756,620 + -0.0
756,623 - +0.2
757,003 - +1.7
757,318 - 11045 mRNA_2677 0.55 +0.1
757,325 + 11045 mRNA_2677 0.56 -0.4
757,355 - 11045 mRNA_2677 0.61 -0.2
757,424 + 11045 mRNA_2677 0.72 +1.2
757,462 - 11045 mRNA_2677 0.79 -0.2
757,640 - -0.1
757,737 + +1.0
757,747 - +0.3
757,803 - +0.1
757,880 + +0.5
757,886 - -0.5
757,913 - -0.5
758,065 - +2.4
758,221 - +0.0
758,228 + +1.1
758,229 + -0.1
758,318 - +0.4
758,407 + 11046 mRNA_2678 0.17 +1.0

Or see this region's nucleotide sequence