Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2690

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11058 and 11059 are separated by 964 nucleotides mRNA_2690: 11058 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 13,747 to 14,595 11058 mRNA_2691: 11059 - Hypothetical Protein, at 15,560 to 16,423 11059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12,895 + -0.2
13,053 - -0.5
13,057 - -1.1
13,068 + -0.3
13,229 + +0.8
13,313 + +0.9
13,470 - -1.2
13,480 - +1.0
13,480 - -0.5
13,497 - -0.0
13,499 - -0.5
13,503 - +1.1
13,509 - -0.2
13,510 + +0.3
13,517 + -0.9
13,522 + -0.3
13,522 + +1.3
13,661 - +0.8
13,810 - +0.5
13,834 + 11058 mRNA_2690 0.10 +1.1
13,943 - 11058 mRNA_2690 0.23 +0.9
13,949 + 11058 mRNA_2690 0.24 +0.3
13,952 + 11058 mRNA_2690 0.24 +0.0
13,958 + 11058 mRNA_2690 0.25 +2.4
13,960 - 11058 mRNA_2690 0.25 -1.0
13,963 + 11058 mRNA_2690 0.25 -0.0
13,967 + 11058 mRNA_2690 0.26 +2.3
13,971 - 11058 mRNA_2690 0.26 +1.2
13,984 - 11058 mRNA_2690 0.28 +1.9
13,994 + 11058 mRNA_2690 0.29 -0.9
14,085 - 11058 mRNA_2690 0.40 +2.2
14,089 + 11058 mRNA_2690 0.40 -0.3
14,095 - 11058 mRNA_2690 0.41 -0.6
14,111 - 11058 mRNA_2690 0.43 +0.2
14,133 + 11058 mRNA_2690 0.45 +0.2
14,168 + 11058 mRNA_2690 0.50 +0.7
14,168 + 11058 mRNA_2690 0.50 +0.1
14,168 - 11058 mRNA_2690 0.50 +0.6
14,246 - 11058 mRNA_2690 0.59 -0.5
14,250 + 11058 mRNA_2690 0.59 -0.1
14,267 + 11058 mRNA_2690 0.61 -0.1
14,268 - 11058 mRNA_2690 0.61 +2.1
14,283 - 11058 mRNA_2690 0.63 -0.7
14,283 + 11058 mRNA_2690 0.63 -0.5
14,283 + 11058 mRNA_2690 0.63 -0.1
14,285 - 11058 mRNA_2690 0.63 +0.5
14,287 - 11058 mRNA_2690 0.64 -1.4
14,291 + 11058 mRNA_2690 0.64 -0.0
14,318 - 11058 mRNA_2690 0.67 -0.7
14,323 - 11058 mRNA_2690 0.68 -1.2
14,329 - 11058 mRNA_2690 0.69 -1.0
14,331 - 11058 mRNA_2690 0.69 +0.9
14,338 - 11058 mRNA_2690 0.70 -0.0
14,342 - 11058 mRNA_2690 0.70 -0.6
14,346 - 11058 mRNA_2690 0.71 -0.1
14,353 + 11058 mRNA_2690 0.71 -0.4
14,355 - 11058 mRNA_2690 0.72 +0.6
14,356 - 11058 mRNA_2690 0.72 +0.1
14,357 + 11058 mRNA_2690 0.72 +0.2
14,360 - 11058 mRNA_2690 0.72 -1.4
14,361 - 11058 mRNA_2690 0.72 -0.1
14,366 + 11058 mRNA_2690 0.73 -0.1
14,368 - 11058 mRNA_2690 0.73 -0.6
14,368 + 11058 mRNA_2690 0.73 +1.7
14,374 - 11058 mRNA_2690 0.74 +0.6
14,376 - 11058 mRNA_2690 0.74 +0.6
14,380 + 11058 mRNA_2690 0.75 +1.7
14,382 - 11058 mRNA_2690 0.75 +0.1
14,398 - 11058 mRNA_2690 0.77 -0.2
14,401 - 11058 mRNA_2690 0.77 -1.6
14,401 - 11058 mRNA_2690 0.77 +0.2
14,403 - 11058 mRNA_2690 0.77 +0.4
14,408 - 11058 mRNA_2690 0.78 -0.2
14,409 - 11058 mRNA_2690 0.78 +1.4
14,411 + 11058 mRNA_2690 0.78 +0.3
14,411 - 11058 mRNA_2690 0.78 -0.5
14,413 + 11058 mRNA_2690 0.78 +0.3
14,416 - 11058 mRNA_2690 0.79 +0.4
14,416 + 11058 mRNA_2690 0.79 +0.2
14,421 + 11058 mRNA_2690 0.79 +1.9
14,425 - 11058 mRNA_2690 0.80 +0.1
14,427 + 11058 mRNA_2690 0.80 +1.1
14,428 + 11058 mRNA_2690 0.80 +1.6
14,430 + 11058 mRNA_2690 0.80 -0.5
14,440 - 11058 mRNA_2690 0.82 +0.1
14,456 - 11058 mRNA_2690 0.84 +0.6
14,466 + 11058 mRNA_2690 0.85 -0.2
14,539 - +0.4
14,545 - +1.4
14,550 + +0.2
14,551 - +0.0
14,552 + +1.2
14,552 + -1.0
14,552 + +1.7
14,561 + -0.8
14,567 - +0.3
14,567 - +2.3
14,570 + -1.1
14,571 - +0.1
14,571 - +0.6
14,572 + +1.0
14,572 + +1.6
14,573 + +1.3
14,576 + +0.7
14,576 - +0.2
14,579 + +2.4
14,582 - +2.0
14,587 + -0.1
14,588 + -0.2
14,590 - +1.6
14,592 + +0.2
14,612 - +1.0
14,628 + -0.7
14,634 + +0.0
14,636 - -0.1
14,654 + -0.0
14,656 - +1.5
14,662 + +0.4
14,662 - -0.1
14,669 + +0.1
14,675 + +2.1
14,675 + +1.6
14,676 - -0.2
14,701 - +1.6
14,718 - -0.3
14,727 - +0.3
14,729 + -0.3
14,745 + +0.4
14,763 - +1.1
14,770 + +1.6
14,787 + -0.9
14,800 - +0.2
14,805 + +1.5
14,828 + -0.4
14,828 + -0.6
14,832 - -0.3
14,833 - -0.1
14,850 - -0.5
14,922 - -0.1
14,929 + +0.6
14,932 + -0.6
14,954 - -0.6
14,958 - -0.2
14,959 + +0.9
14,968 + -0.1
14,972 + +2.5
14,975 + -0.1
14,976 + -0.0
14,982 - +0.7
14,983 - +1.3
14,983 + -0.5
14,986 - +1.5
14,992 + +0.9
14,999 + +2.2
15,002 - -0.2
15,015 - +0.2
15,043 + -0.2
15,048 - +1.5
15,048 - -0.4
15,048 - +1.9
15,049 - +1.3
15,053 - +0.2
15,054 + +1.1
15,054 - +0.1
15,056 - +0.7
15,066 + +0.6
15,071 + -1.2
15,073 + +0.5
15,077 - -0.3
15,097 - +0.6
15,104 + -0.0
15,161 + +0.3
15,162 - -0.1
15,174 - +3.2
15,197 + +0.6
15,206 - +0.3
15,208 - -0.1
15,211 - -0.0
15,230 + -1.0
15,241 + +0.0
15,247 - +1.1
15,248 - +2.0
15,254 + +0.5
15,255 + +1.4
15,255 + -0.1
15,258 - +0.1
15,260 + -0.1
15,266 - +1.8
15,269 + +0.8
15,272 + +0.3
15,276 - +0.1
15,280 - -0.3
15,286 - +0.7
15,288 - +0.8
15,320 - -0.5
15,333 - +0.4
15,335 - +1.9
15,367 - +0.8
15,381 + +1.3
15,385 - -0.7
15,405 - -0.0
15,413 + +0.7
15,426 + +2.1
15,444 + +0.9
15,476 + -0.8
15,520 - +1.4
15,520 - +0.3
15,552 - +1.5
15,555 + -0.1
15,557 + +0.5
15,561 + +2.1
15,562 - +1.6
15,563 - +0.4
15,570 + -0.0
15,576 - -0.0
15,576 - +0.2
15,579 - +1.8

Or see this region's nucleotide sequence