Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2692

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11059 and 11060 are separated by 195 nucleotides11060 and 11061 are separated by 649 nucleotides mRNA_2691: 11059 - Hypothetical Protein, at 15,560 to 16,423 11059 mRNA_2692: 11060 - K06656 PCL1 G1/S-specific cyclin PLC1, at 16,619 to 17,964 11060 mRNA_2693: 11061 - K18470 ARHGAP1, CDC42GAP Rho GTPase-activating protein 1, at 18,614 to 20,530 11061

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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15,637 - -1.2
15,638 - +0.6
15,643 - +0.2
15,648 + 11059 mRNA_2691 0.10 -0.4
15,653 + 11059 mRNA_2691 0.11 +0.5
15,654 + 11059 mRNA_2691 0.11 -0.1
15,657 + 11059 mRNA_2691 0.11 +0.6
15,669 + 11059 mRNA_2691 0.13 +0.1
15,670 - 11059 mRNA_2691 0.13 +0.2
15,679 - 11059 mRNA_2691 0.14 +1.6
15,680 + 11059 mRNA_2691 0.14 -0.3
15,688 - 11059 mRNA_2691 0.15 +2.2
15,706 + 11059 mRNA_2691 0.17 +1.5
15,711 - 11059 mRNA_2691 0.17 +1.7
15,711 + 11059 mRNA_2691 0.17 +0.2
15,711 + 11059 mRNA_2691 0.17 +0.1
15,711 + 11059 mRNA_2691 0.17 +0.1
15,716 + 11059 mRNA_2691 0.18 +0.6
15,727 - 11059 mRNA_2691 0.19 -1.1
15,728 + 11059 mRNA_2691 0.19 +2.3
15,737 + 11059 mRNA_2691 0.20 +1.3
15,749 - 11059 mRNA_2691 0.22 -4.0
15,752 + 11059 mRNA_2691 0.22 -0.5
15,774 - 11059 mRNA_2691 0.25 +1.2
15,775 + 11059 mRNA_2691 0.25 +1.5
15,777 + 11059 mRNA_2691 0.25 +0.1
15,781 - 11059 mRNA_2691 0.26 +0.8
15,820 - 11059 mRNA_2691 0.30 +0.0
15,834 + 11059 mRNA_2691 0.32 +0.6
15,834 + 11059 mRNA_2691 0.32 +0.2
15,843 + 11059 mRNA_2691 0.33 +0.0
15,851 - 11059 mRNA_2691 0.34 +0.2
15,858 + 11059 mRNA_2691 0.34 +1.2
15,859 + 11059 mRNA_2691 0.35 +1.4
15,864 - 11059 mRNA_2691 0.35 -0.2
15,864 + 11059 mRNA_2691 0.35 +2.2
15,864 - 11059 mRNA_2691 0.35 +0.3
15,864 + 11059 mRNA_2691 0.35 +0.4
15,865 + 11059 mRNA_2691 0.35 +0.0
15,867 + 11059 mRNA_2691 0.36 +0.1
15,880 + 11059 mRNA_2691 0.37 +0.6
15,997 - 11059 mRNA_2691 0.51 +2.1
16,001 + 11059 mRNA_2691 0.51 +0.3
16,022 - 11059 mRNA_2691 0.53 +0.6
16,022 - 11059 mRNA_2691 0.53 -0.6
16,138 - 11059 mRNA_2691 0.67 +0.5
16,153 - 11059 mRNA_2691 0.69 +0.8
16,155 + 11059 mRNA_2691 0.69 +0.3
16,174 + 11059 mRNA_2691 0.71 +0.2
16,177 + 11059 mRNA_2691 0.71 -1.4
16,184 + 11059 mRNA_2691 0.72 -0.1
16,185 + 11059 mRNA_2691 0.72 -0.4
16,213 - 11059 mRNA_2691 0.76 -1.3
16,214 - 11059 mRNA_2691 0.76 +0.8
16,309 + 11059 mRNA_2691 0.87 +0.5
16,319 - 11059 mRNA_2691 0.88 +0.1
16,322 - 11059 mRNA_2691 0.88 +1.7
16,340 - -0.1
16,344 - +2.7
16,350 - +1.0
16,361 + +0.2
16,365 + +0.8
16,372 + +0.7
16,379 - -0.5
16,508 - +0.4
16,510 + -0.0
16,526 + +0.5
16,644 + +2.2
16,669 + +0.4
16,828 - 11060 mRNA_2692 0.16 +1.5
16,851 + 11060 mRNA_2692 0.17 +1.8
16,948 - 11060 mRNA_2692 0.24 -0.4
16,960 - 11060 mRNA_2692 0.25 +1.5
16,979 - 11060 mRNA_2692 0.27 +0.5
17,114 - 11060 mRNA_2692 0.37 +1.3
17,255 - 11060 mRNA_2692 0.47 +1.4
17,261 - 11060 mRNA_2692 0.48 +0.2
17,424 + 11060 mRNA_2692 0.60 +0.9
17,571 + 11060 mRNA_2692 0.71 +1.1
17,714 + 11060 mRNA_2692 0.81 -0.6
17,984 + -0.2
18,124 + +1.1
18,236 - -1.0
18,439 - +1.7
18,682 - +1.0
18,871 - 11061 mRNA_2693 0.13 +0.4

Or see this region's nucleotide sequence