Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2696

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11064 and 11065 are separated by 890 nucleotides mRNA_2696: 11064 - K02147 ATPeV1B, ATP6B V-type H+-transporting ATPase subunit B, at 25,787 to 28,355 11064 mRNA_2697: 11065 - Hypothetical Protein, at 29,246 to 31,443 11065

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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24,880 - +0.0
24,881 - +0.4
24,882 - +1.8
24,884 - +0.6
24,887 - -1.0
24,890 + -1.1
24,893 + -0.1
24,898 - +0.4
24,906 - -0.2
24,910 - -0.8
24,988 + +1.0
25,051 + -0.6
25,101 - +1.0
25,175 - +0.4
25,194 - +0.1
25,236 + +3.2
25,258 - +1.2
25,263 - -2.0
25,292 - +2.4
25,294 - -0.0
25,294 - +1.3
25,313 + -0.1
25,344 - +0.6
25,362 - -1.1
25,376 + -0.3
25,439 - +2.5
25,447 + -0.5
25,459 + +1.1
25,466 - -0.1
25,469 - +0.2
25,471 - +2.7
25,575 + -0.1
25,586 + -1.4
25,642 + -0.1
25,654 - +0.4
25,668 + +3.3
25,758 + +0.2
25,765 + +0.3
25,770 + -0.5
28,411 - +0.2
28,688 - +1.1
28,697 - +0.7
28,716 + -0.4
28,845 + +1.1
29,004 - +0.2
29,011 + +1.8
29,014 - -0.5
29,024 - +1.4
29,032 + -0.3
29,033 - -0.1
29,044 - +0.6
29,045 - +0.2
29,160 - +1.7
29,161 - +0.3
29,186 + +2.1
29,323 - +0.0

Or see this region's nucleotide sequence