Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2707

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11074 and 11075 are separated by 445 nucleotides mRNA_2706: 11074 - HMMPfam-PLAC8 family-PF04749,TIGRFAM-A_thal_Cys_rich uncharacterized Cys-rich domain-TIGR01571, at 47,300 to 48,078 11074 mRNA_2707: 11075 - KOG0254 Predicted transporter (major facilitator superfamily), at 48,524 to 50,718 11075

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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47,582 + 11074 mRNA_2706 0.36 +1.6
47,717 + 11074 mRNA_2706 0.54 -0.2
47,950 - 11074 mRNA_2706 0.83 +0.6
47,966 + 11074 mRNA_2706 0.85 -0.8
48,263 + -0.4
48,325 - -1.0
48,540 + -0.2
48,700 - +0.2
49,112 + 11075 mRNA_2707 0.27 +0.1
49,249 + 11075 mRNA_2707 0.33 +0.5
49,360 + 11075 mRNA_2707 0.38 +1.2
49,380 - 11075 mRNA_2707 0.39 +1.3
49,408 + 11075 mRNA_2707 0.40 -0.6
49,687 - 11075 mRNA_2707 0.53 -0.4
49,700 - 11075 mRNA_2707 0.54 +0.7
49,706 + 11075 mRNA_2707 0.54 +0.2
49,810 - 11075 mRNA_2707 0.59 +0.2
49,967 + 11075 mRNA_2707 0.66 -0.2
50,124 - 11075 mRNA_2707 0.73 -0.8
50,294 - 11075 mRNA_2707 0.81 +1.4
50,377 - 11075 mRNA_2707 0.84 -0.0
50,406 + 11075 mRNA_2707 0.86 +1.7
50,429 - 11075 mRNA_2707 0.87 +0.6
50,442 - 11075 mRNA_2707 0.87 +0.3
50,546 - +1.3
50,552 - +1.4
50,701 - +1.1
50,812 - +1.1
50,826 - +0.2
50,855 - +1.2
50,856 - +0.5
50,857 - +0.8
50,861 + +0.6
50,874 - +1.4
50,875 - +0.9
50,877 - +2.3
50,912 + +0.7
51,005 - -0.1
51,018 - +0.6
51,025 + +0.2
51,027 + +1.3
51,043 + +1.0
51,050 + -0.2
51,050 + +1.5
51,058 + -0.2
51,062 + +2.9
51,080 - +1.7
51,086 - +1.0
51,116 - -0.9
51,171 - +0.2
51,183 - +0.0
51,188 + +0.7
51,190 + +0.9
51,346 + -0.5
51,489 - -0.1
51,522 - -2.5
51,711 + +0.4

Or see this region's nucleotide sequence