Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2712

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11079 and 11080 are separated by 180 nucleotides11080 and 11081 are separated by 189 nucleotides mRNA_2711: 11079 - K01098 CET1 polynucleotide 5'-triphosphatase, at 56,930 to 58,742 11079 mRNA_2712: 11080 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 58,923 to 60,414 11080 mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559 11081

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
58,890 - -0.2
59,012 - +2.5
59,174 + 11080 mRNA_2712 0.17 -0.1
59,328 + 11080 mRNA_2712 0.27 +1.7
59,421 - 11080 mRNA_2712 0.33 -1.1
59,650 - 11080 mRNA_2712 0.49 +1.4
59,772 - 11080 mRNA_2712 0.57 +0.9
60,232 - 11080 mRNA_2712 0.88 +0.0
60,480 - +1.6
60,723 + 11081 mRNA_2713 0.12 +0.9
61,348 - 11081 mRNA_2713 0.78 -0.6

Or see this region's nucleotide sequence