Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2713

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11080 and 11081 are separated by 189 nucleotides mRNA_2712: 11080 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 58,923 to 60,414 11080 mRNA_2713: 11081 - BLAST Clp1-like protein, putative [Rhizoctonia solani AG-3 ..., at 60,604 to 61,559 11081

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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59,650 - 11080 mRNA_2712 0.49 +1.4
59,772 - 11080 mRNA_2712 0.57 +0.9
60,232 - 11080 mRNA_2712 0.88 +0.0
60,480 - +1.6
60,723 + 11081 mRNA_2713 0.12 +0.9
61,348 - 11081 mRNA_2713 0.78 -0.6
61,497 - -0.6
61,647 - +0.1
61,779 - -0.2
61,811 + +0.8
61,828 + +0.6
61,835 + -0.5
61,884 - +0.2
61,899 - -0.4
61,928 + -0.6
61,942 + -0.7
61,969 - +0.1
61,978 - -0.7
62,019 + -0.4
62,039 - -0.1
62,043 - +0.4
62,045 + +0.4
62,049 - +0.3
62,075 + +1.1
62,078 - +0.8
62,189 + +0.3
62,245 - -0.0
62,247 - +0.9
62,277 + -0.0
62,278 + +1.7
62,283 + +1.3
62,342 + +0.7
62,355 - +0.9
62,378 + +0.1
62,383 - +0.3
62,389 + -0.1
62,390 - +1.6
62,396 - -0.0
62,398 - -0.1
62,399 - +0.9
62,406 + -0.0
62,407 + -0.3
62,410 + -0.1
62,413 + +0.9
62,416 + +1.0
62,422 + +0.0
62,427 + +0.3
62,428 - +0.3
62,432 + -0.1
62,505 - +0.7
62,512 - +0.4
62,515 - -0.7
62,533 + +0.5
62,536 - +0.2
62,546 + +2.3
62,557 + +0.6

Or see this region's nucleotide sequence