Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2737

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11104 and 11105 are separated by 280 nucleotides mRNA_2736: 11104 - K11093 SNRP70 U1 small nuclear ribonucleoprotein 70kDa, at 103,067 to 104,847 11104 mRNA_2737: 11105 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 105,128 to 106,332 11105

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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104,965 + -0.1
105,222 - -1.0
105,512 + 11105 mRNA_2737 0.32 +0.1
105,613 - 11105 mRNA_2737 0.40 +1.0
105,820 - 11105 mRNA_2737 0.57 +0.2
106,231 - -0.0
106,364 - +0.1
106,376 + +0.3
106,546 - +0.9
106,645 + +0.4
106,669 - -0.0
106,844 - +0.2
106,862 + +0.5
106,986 + -0.6
107,149 - +0.2
107,323 + +0.1

Or see this region's nucleotide sequence