Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2757

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11125 and 11126 are separated by 267 nucleotides mRNA_2757: 11125 - Hypothetical Protein, at 149,493 to 150,603 11125 mRNA_2758: 11126 - Hypothetical Protein, at 150,871 to 152,585 11126

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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148,785 + +0.8
148,816 + +0.5
148,868 - -0.7
149,308 + -0.5
149,518 + -0.5
149,539 - +1.6
150,073 - 11125 mRNA_2757 0.52 -0.2
150,389 + 11125 mRNA_2757 0.81 -0.8
150,810 - +0.6
150,823 - +2.5
150,946 + +1.0
150,954 - +1.3
150,960 - -0.0
150,966 + +0.6
150,993 + -0.2
151,254 - 11126 mRNA_2758 0.22 +1.4
151,260 + 11126 mRNA_2758 0.23 -0.3
151,278 + 11126 mRNA_2758 0.24 -0.3
151,406 + 11126 mRNA_2758 0.31 +0.4
151,407 - 11126 mRNA_2758 0.31 +2.0

Or see this region's nucleotide sequence