Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2779

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11146 and 11147 are separated by 129 nucleotides mRNA_2778: 11146 - K15264 NSUN5, WBSCR20 putative methyltransferase, at 188,984 to 191,295 11146 mRNA_2779: 11147 - K18278 THI5 pyrimidine precursor biosynthesis enzyme, at 191,425 to 193,018 11147

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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190,735 + 11146 mRNA_2778 0.76 +0.3
190,941 - 11146 mRNA_2778 0.85 -0.1
190,942 + 11146 mRNA_2778 0.85 +0.3
190,964 - 11146 mRNA_2778 0.86 +0.2
190,970 + 11146 mRNA_2778 0.86 -0.6
191,153 - +2.2
191,153 + +0.6
191,161 + +1.5
191,319 + -0.2
191,320 - -0.9
191,348 - -0.6
191,430 - +0.9
191,441 - +0.7
191,552 + +0.7
191,580 - +1.6
191,763 + 11147 mRNA_2779 0.21 -0.1
191,794 + 11147 mRNA_2779 0.23 +2.0
192,023 - 11147 mRNA_2779 0.38 +0.3
192,129 + 11147 mRNA_2779 0.44 +0.6
192,420 + 11147 mRNA_2779 0.62 +1.0
192,733 - 11147 mRNA_2779 0.82 +0.1
192,852 - 11147 mRNA_2779 0.90 -0.2
192,990 + +0.8
192,990 + +0.2
192,995 - +0.4
193,008 + +1.4
193,018 - +0.3
193,021 + -0.4
193,052 + -0.3
193,120 + -0.2
193,253 + -1.9
193,285 - +0.1
193,308 + +1.2
193,309 - +1.1
193,310 - -0.5
193,318 + -0.4
193,321 - +0.2
193,330 + -1.3
193,383 - +1.3
193,384 + -0.4
193,391 + +0.7
193,397 - -0.5
193,397 - +1.5
193,404 + +0.5
193,414 - -0.3
193,435 - +0.8
193,462 - -2.2
193,478 - -0.3
193,480 - +1.0
193,489 - -1.8
193,522 - +0.4
193,529 + +1.1
193,543 + -0.8
193,563 + -0.9
193,573 - +1.0
193,578 + +1.4
193,578 + +0.4
193,582 + -0.4
193,600 + +1.3
193,615 - +1.8
193,621 + -0.4
193,622 + -0.2
193,623 + -0.6
193,703 + +1.1
193,745 + +0.7
193,749 + -0.4
193,875 - +1.4
193,900 + -2.5

Or see this region's nucleotide sequence