Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2781

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11148 and 11149 are separated by 173 nucleotides mRNA_2780: 11148 - KOG0546 HSP90 co-chaperone CPR7/Cyclophilin, at 194,102 to 194,966 11148 mRNA_2781: 11149 - K09506 DNAJA5 DnaJ homolog subfamily A member 5, at 195,140 to 197,521 11149

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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194,369 - 11148 mRNA_2780 0.31 +0.0
194,482 - 11148 mRNA_2780 0.44 +1.4
194,582 - 11148 mRNA_2780 0.55 +1.8
194,599 + 11148 mRNA_2780 0.57 -0.2
194,602 - 11148 mRNA_2780 0.58 -0.5
194,770 - 11148 mRNA_2780 0.77 -0.1
194,880 + +1.2
194,919 - -1.7
194,924 - +0.9
194,925 + -0.5
194,926 + +0.3
195,071 + +0.3
195,200 - -0.2
195,228 + +1.8
195,345 + -0.1
195,661 - 11149 mRNA_2781 0.22 +2.0
195,759 - 11149 mRNA_2781 0.26 +1.0
195,810 + 11149 mRNA_2781 0.28 +0.9
195,852 - 11149 mRNA_2781 0.30 +1.0
195,891 + 11149 mRNA_2781 0.32 +0.9
196,381 - 11149 mRNA_2781 0.52 +0.0
196,624 + 11149 mRNA_2781 0.62 +0.6
196,652 + 11149 mRNA_2781 0.63 +0.3
196,949 + 11149 mRNA_2781 0.76 +1.7
197,083 + 11149 mRNA_2781 0.82 +0.2
197,086 - 11149 mRNA_2781 0.82 +0.3
197,397 - -0.6
197,514 - +0.0
197,547 - -0.8
197,553 - +1.5
197,581 + +0.4
197,609 - -0.9
197,660 - +0.9
197,676 + +1.6
197,679 + -0.8
197,687 - +0.7
197,702 + -0.1
197,721 - -1.3
197,721 + +2.0
197,746 - +0.3
197,823 + -0.6
197,828 - -0.4
197,960 - -0.3
197,971 - +0.9
197,975 - +0.4
197,976 - +2.3
197,982 + +0.2
197,986 - -0.1
197,988 - +1.5
197,990 - +0.3
198,009 + +0.0
198,010 + +0.7
198,019 - -1.8
198,023 + -0.2
198,025 - +1.1
198,139 + +0.2
198,151 + -0.1
198,159 - -1.3
198,306 - -1.2
198,310 - -0.1
198,321 + +0.3
198,331 - +1.0
198,337 + -0.0
198,468 + -1.2
198,491 + +0.1
198,510 + -0.7

Or see this region's nucleotide sequence