Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2808

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11175 and 11176 are separated by 334 nucleotides11176 and 11177 are separated by 434 nucleotides mRNA_2807: 11175 - K11485 MTF2, PCL2 polycomb-like protein 2, at 267,312 to 269,571 11175 mRNA_2808: 11176 - KOG4539 Uncharacterized conserved protein, at 269,906 to 271,117 11176 mRNA_2809: 11177 - K08596 SENP7 sentrin-specific protease 7, at 271,552 to 278,521 11177

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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269,167 + 11175 mRNA_2807 0.82 -0.7
269,190 + 11175 mRNA_2807 0.83 -0.0
269,315 + 11175 mRNA_2807 0.89 +1.3
269,330 + 11175 mRNA_2807 0.89 +0.4
269,456 + -0.4
269,480 - +1.7
269,489 - -0.1
269,603 - +1.5
269,734 + +0.6
269,759 + +0.6
269,822 + -0.2
269,876 - +0.8
269,879 - +0.4
269,910 + -0.1
269,913 - -0.2
270,045 - 11176 mRNA_2808 0.11 +1.5
270,182 + 11176 mRNA_2808 0.23 +1.3
270,184 - 11176 mRNA_2808 0.23 -1.3
270,206 - 11176 mRNA_2808 0.25 +1.3
270,469 + 11176 mRNA_2808 0.46 +0.4
270,594 + 11176 mRNA_2808 0.57 -0.7
270,639 - 11176 mRNA_2808 0.60 -1.5
271,064 + -0.3
271,078 + +1.1
271,204 - +2.3
271,223 + +0.4
271,356 + +0.4
271,363 - +1.2
271,512 + -0.2
271,552 - +0.6
271,786 - -0.5

Or see this region's nucleotide sequence