Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2815

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11182 and 11183 are separated by 441 nucleotides11183 and 11184 are separated by 305 nucleotides mRNA_2814: 11182 - Hypothetical Protein, at 285,527 to 286,439 11182 mRNA_2815: 11183 - K09699 DBT, bkdB 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase), at 286,881 to 288,952 11183 mRNA_2816: 11184 - HMMPfam-linker histone H1 and H5 family-PF00538,ProSiteProfiles-Linker histone H1/H5 globular (H15) domain profile.-PS51504,SMART-Domain in histone families 1 and 5-SM00526,SUPERFAMILY--SSF46785, at 289,258 to 289,809 11184

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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288,699 + 11183 mRNA_2815 0.88 +0.8
288,825 - +1.0
289,108 - +0.6
289,182 - +0.3
289,297 + +0.4
289,468 - 11184 mRNA_2816 0.38 +0.3
289,475 - 11184 mRNA_2816 0.39 +1.3
289,478 - 11184 mRNA_2816 0.40 -0.3
289,571 - 11184 mRNA_2816 0.57 +2.7

Or see this region's nucleotide sequence