Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2842

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11209 and 11210 are separated by 765 nucleotides11210 and 11211 are separated by 393 nucleotides mRNA_2841: 11209 - KOG3290 Peroxisomal phytanoyl-CoA hydroxylase, at 339,851 to 340,983 11209 mRNA_2842: 11210 - Hypothetical Protein, at 341,749 to 343,529 11210 mRNA_2843: 11211 - Hypothetical Protein, at 343,923 to 345,879 11211

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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341,047 - -0.3
341,054 + +0.9
341,127 - +1.1
341,144 + -0.5
341,278 + +0.2
341,785 - +1.6
342,003 - 11210 mRNA_2842 0.14 -0.5
342,254 - 11210 mRNA_2842 0.28 +1.1
342,254 + 11210 mRNA_2842 0.28 +0.4
342,262 - 11210 mRNA_2842 0.29 -0.6
342,297 + 11210 mRNA_2842 0.31 +0.2
342,357 - 11210 mRNA_2842 0.34 +2.2
342,521 - 11210 mRNA_2842 0.43 -0.6
342,535 + 11210 mRNA_2842 0.44 +1.9
342,597 + 11210 mRNA_2842 0.48 -0.5
342,622 + 11210 mRNA_2842 0.49 +0.4
343,015 + 11210 mRNA_2842 0.71 -0.4
343,139 - 11210 mRNA_2842 0.78 -0.2
343,396 - +0.4
343,626 - +0.7
343,707 + +1.3
343,738 - +2.1
343,882 - -0.6
344,390 + 11211 mRNA_2843 0.24 -1.1
344,396 - 11211 mRNA_2843 0.24 -0.1

Or see this region's nucleotide sequence