Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2848

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11215 and 11216 are separated by 950 nucleotides mRNA_2847: 11215 - ProSitePatterns-Zinc finger RING-type signature.-PS00518, at 351,577 to 353,493 11215 mRNA_2848: 11216 - HMMPfam-GMC oxidoreductase-PF00732,HMMPfam-GMC oxidoreductase-PF05199,PIRSF--PIRSF000137,ProSitePatterns-GMC oxidoreductases signature 2.-PS00624,SUPERFAMILY--SSF51905,SUPERFAMILY--SSF54373, at 354,444 to 356,897 11216

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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353,644 - -0.0
353,672 + +0.1
353,951 + -0.6
353,956 - +0.3
353,957 - +0.2
353,966 - -0.1
353,970 - -0.7
353,990 + +0.2
354,300 - -0.4
354,327 + +0.6
354,553 - -0.0
354,590 + -1.0
354,591 + -0.2
354,594 - -0.1
354,628 - +0.3
354,730 - 11216 mRNA_2848 0.12 -0.1
354,763 + 11216 mRNA_2848 0.13 -0.1
355,032 - 11216 mRNA_2848 0.24 +1.8
355,032 - 11216 mRNA_2848 0.24 -1.4
355,040 + 11216 mRNA_2848 0.24 -0.3
355,045 - 11216 mRNA_2848 0.24 -0.1
355,145 - 11216 mRNA_2848 0.29 -0.7
355,148 - 11216 mRNA_2848 0.29 +0.5
355,159 + 11216 mRNA_2848 0.29 +1.8
355,284 + 11216 mRNA_2848 0.34 -0.8
355,327 + 11216 mRNA_2848 0.36 -0.0
355,334 + 11216 mRNA_2848 0.36 +0.1
355,435 - 11216 mRNA_2848 0.40 -1.0
355,455 + 11216 mRNA_2848 0.41 +0.1
355,465 + 11216 mRNA_2848 0.42 +0.6
355,712 + 11216 mRNA_2848 0.52 -1.2
355,742 - 11216 mRNA_2848 0.53 +0.0
355,752 + 11216 mRNA_2848 0.53 +2.5
355,765 - 11216 mRNA_2848 0.54 -0.1
356,073 - 11216 mRNA_2848 0.66 +0.2
356,191 - 11216 mRNA_2848 0.71 +0.5
356,244 - 11216 mRNA_2848 0.73 -0.4
356,598 + 11216 mRNA_2848 0.88 -0.0
356,748 - +0.5
356,749 - +0.2
356,965 - +0.6
357,081 - -0.3
357,083 - -0.3
357,083 - +2.1
357,251 + +0.4
357,259 - -0.5
357,264 - -0.5
357,273 + +1.0
357,326 + +0.7
357,408 - +0.9
357,426 + +0.7
357,603 - +3.2
357,713 + +0.7
357,876 + +0.7

Or see this region's nucleotide sequence