Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2851

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11218 and 11219 are separated by 401 nucleotides11219 and 11220 are separated by 270 nucleotides mRNA_2850: 11218 - SUPERFAMILY--SSF52047, at 360,186 to 362,999 11218 mRNA_2851: 11219 - SUPERFAMILY--SSF52047, at 363,401 to 364,630 11219 mRNA_2852: 11220 - K01164 POP1 ribonuclease P/MRP protein subunit POP1, at 364,901 to 367,915 11220

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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362,613 + 11218 mRNA_2850 0.86 +0.6
362,774 + +1.1
363,004 - +1.0
363,232 + +1.7
363,336 + +0.2
363,337 + +0.4
363,348 - -0.4
363,364 - -1.0
363,564 - 11219 mRNA_2851 0.13 +1.4
363,631 + 11219 mRNA_2851 0.19 +0.1
363,634 + 11219 mRNA_2851 0.19 -0.9
363,676 + 11219 mRNA_2851 0.22 +1.2
364,108 + 11219 mRNA_2851 0.57 -0.6
364,118 - 11219 mRNA_2851 0.58 -0.6
364,241 - 11219 mRNA_2851 0.68 +0.2
364,246 + 11219 mRNA_2851 0.69 -0.2
364,351 - 11219 mRNA_2851 0.77 +0.9
364,375 + 11219 mRNA_2851 0.79 +0.1
364,380 - 11219 mRNA_2851 0.80 +0.9
364,515 - -0.4
364,606 + -0.3
364,669 + +1.4
364,807 - -0.7
364,809 - +0.2
364,811 - -2.5
364,820 - -0.0
364,831 + -0.7
364,924 - +1.4

Or see this region's nucleotide sequence