Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2905

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11272 and 11273 are separated by 111 nucleotides mRNA_2904: 11272 - K03847 ALG12 alpha-1,6-mannosyltransferase, at 503,747 to 505,698 11272 mRNA_2905: 11273 - Hypothetical Protein, at 505,810 to 506,740 11273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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504,886 - 11272 mRNA_2904 0.58 -1.2
504,901 + 11272 mRNA_2904 0.59 -0.8
505,037 + 11272 mRNA_2904 0.66 -0.8
505,167 - 11272 mRNA_2904 0.73 +0.6
505,174 + 11272 mRNA_2904 0.73 +0.6
505,205 - 11272 mRNA_2904 0.75 -0.7
505,706 + -0.5
505,793 + +1.6
506,471 - 11273 mRNA_2905 0.71 -0.1
506,841 - +0.7
507,258 - +1.0
507,480 + -1.5
507,545 - +0.7

Or see this region's nucleotide sequence