Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2943

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11310 and 11311 are separated by 201 nucleotides mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608,424 to 609,485 11310 mRNA_2943: 11311 - KOG1902 Putative signal transduction protein involved in RNA splicing, at 609,687 to 613,545 11311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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608,814 + 11310 mRNA_2942 0.37 -0.8
609,005 - 11310 mRNA_2942 0.55 +1.7
609,117 - 11310 mRNA_2942 0.65 +0.6
609,216 + 11310 mRNA_2942 0.75 -1.7
609,263 - 11310 mRNA_2942 0.79 -1.1
609,360 + 11310 mRNA_2942 0.88 -0.6
609,376 - 11310 mRNA_2942 0.90 +1.5
609,431 - +0.3
609,433 - +1.8
609,548 + +0.3
609,741 - -0.6
609,852 - +0.4
610,454 - 11311 mRNA_2943 0.20 -0.0
610,594 + 11311 mRNA_2943 0.24 -0.6
610,883 + 11311 mRNA_2943 0.31 +0.3
610,919 + 11311 mRNA_2943 0.32 -0.9
611,144 - 11311 mRNA_2943 0.38 +0.2
611,448 + 11311 mRNA_2943 0.46 +0.1
611,901 + 11311 mRNA_2943 0.57 +0.1
611,922 - 11311 mRNA_2943 0.58 -0.2
611,931 - 11311 mRNA_2943 0.58 -0.3
612,206 + 11311 mRNA_2943 0.65 +0.5
612,338 - 11311 mRNA_2943 0.69 +1.2
612,629 + 11311 mRNA_2943 0.76 -0.3
612,766 + 11311 mRNA_2943 0.80 +0.3
612,898 - 11311 mRNA_2943 0.83 +0.2
613,065 + 11311 mRNA_2943 0.88 +0.1
613,126 - 11311 mRNA_2943 0.89 -0.0
613,181 - -1.6
613,181 + -0.9
613,197 - -0.1
613,340 - -0.4
613,457 - +0.3
613,472 - +0.7
613,571 + -0.7
613,708 - -0.5
613,719 - +2.4
613,786 - +0.1
613,787 + -0.1
613,787 + +2.0
613,788 + +0.5
613,805 - -1.0
613,816 - +1.9
613,821 + +0.5
613,822 + +1.6
613,885 - +0.4
613,997 + +0.6
614,029 - -0.1
614,044 + +0.3
614,053 - +0.2
614,054 + +0.2
614,055 + -0.0
614,071 + +0.8
614,072 + -0.3
614,072 + -0.8
614,072 - -0.8
614,073 - -1.2
614,076 - +0.6
614,076 - +0.2
614,078 - +0.4
614,084 - +0.3
614,101 - -2.0
614,101 + +1.8
614,101 + +0.1
614,103 - +2.8
614,104 - +0.1
614,105 - +0.9
614,109 - -1.7
614,408 + -0.3

Or see this region's nucleotide sequence