Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2953

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11320 and 11321 are separated by 72 nucleotides mRNA_2952: 11320 - Hypothetical Protein, at 636,542 to 638,719 11320 mRNA_2953: 11321 - Hypothetical Protein, at 638,792 to 639,757 11321

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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638,080 + 11320 mRNA_2952 0.71 -0.4
638,081 + 11320 mRNA_2952 0.71 +1.6
638,261 - 11320 mRNA_2952 0.79 +0.3
638,760 - -0.2
639,268 + 11321 mRNA_2953 0.49 -0.5
639,369 - 11321 mRNA_2953 0.60 +1.0
639,377 - 11321 mRNA_2953 0.61 +0.2
639,516 - 11321 mRNA_2953 0.75 -0.0
639,520 - 11321 mRNA_2953 0.75 -0.6
639,553 + 11321 mRNA_2953 0.79 +0.3
639,703 + -1.2
639,810 - +0.8
639,815 - +0.1
639,855 - +2.2
639,922 - -0.4
640,129 - +0.3
640,412 + +0.0
640,457 + +0.8
640,481 - +1.6
640,512 - +0.1
640,517 - +2.4
640,517 + -0.5
640,521 - -1.4
640,535 - +0.2
640,539 + +1.3
640,539 + -0.1
640,542 - -0.7
640,553 - -0.8
640,554 + -0.5
640,573 - +1.3
640,585 - +0.2
640,592 + -0.0
640,606 - +0.4
640,616 - +0.5
640,616 - -0.1
640,622 - -0.2
640,622 - +0.8
640,623 + -0.5
640,625 + -0.2
640,626 - +2.1
640,627 + -0.1
640,627 + -0.5
640,631 + +0.6
640,631 + +1.3
640,633 - +0.2
640,638 - +0.0
640,640 - -0.1
640,641 + +0.3
640,644 + +1.2
640,665 + +1.8
640,666 - +0.4
640,667 - +0.8
640,669 + -0.1
640,688 + +1.2
640,691 + -0.0
640,691 - -0.5
640,692 - +0.3
640,693 + -0.1
640,693 - +0.7
640,709 + +1.9
640,714 - -0.6
640,717 + +0.7
640,718 + -1.8
640,718 - -0.4
640,721 + +0.5
640,721 + -0.5
640,721 - +1.4
640,725 + +0.7
640,732 - +0.8
640,737 - +0.1

Or see this region's nucleotide sequence