Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2958

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11325 and 11326 are separated by 858 nucleotides mRNA_2957: 11325 - Hypothetical Protein, at 645,332 to 646,636 11325 mRNA_2958: 11326 - K17907 ATG9 autophagy-related protein 9, at 647,495 to 650,461 11326

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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646,603 + -0.5
646,635 + -1.8
646,744 - +1.4
646,747 + +0.8
646,821 - +2.0
646,894 - -0.1
647,166 + +0.2
647,168 - -0.4
647,213 + +0.1
647,321 - +1.8
647,607 - -1.0
647,612 - -0.6
647,612 - -1.1
647,612 - -2.1
647,612 - +0.8
647,624 - -0.6
647,635 - -1.8
647,763 - +0.5
647,767 + -1.1
648,061 + 11326 mRNA_2958 0.19 -0.6
648,241 + 11326 mRNA_2958 0.25 -0.8
648,369 - 11326 mRNA_2958 0.29 +1.0
648,509 + 11326 mRNA_2958 0.34 -0.4
648,754 - 11326 mRNA_2958 0.42 -0.5
649,221 + 11326 mRNA_2958 0.58 -1.0
649,260 + 11326 mRNA_2958 0.59 -1.2
649,369 + 11326 mRNA_2958 0.63 -1.7
649,649 - 11326 mRNA_2958 0.73 -1.1
649,652 - 11326 mRNA_2958 0.73 -0.0
650,273 + -2.3
650,377 - -1.5
650,566 + +0.1
650,688 - -2.4
651,118 + +0.1
651,134 - +0.3
651,142 + +0.6
651,289 + +0.3
651,299 + -0.1
651,386 + +1.2
651,447 + +0.1
651,450 - -0.8

Or see this region's nucleotide sequence