Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2965

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11332 and 11333 are separated by 496 nucleotides11333 and 11334 are separated by 392 nucleotides mRNA_2964: 11332 - K00965 galT, GALT UDPglucose--hexose-1-phosphate uridylyltransferase, at 664,147 to 666,205 11332 mRNA_2965: 11333 - KOG1721 FOG Zn-finger, at 666,702 to 669,525 11333 mRNA_2966: 11334 - KOG3238 Chloride ion current inducer protein, at 669,918 to 671,056 11334

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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665,842 + 11332 mRNA_2964 0.82 +1.2
666,254 - +1.2
666,271 + -0.2
666,423 + +0.3
666,551 - -1.0
666,612 - -0.3
666,632 + +1.8
666,634 - -0.0
666,673 + +2.1
666,702 + -0.5
666,930 + +0.8
667,019 + 11333 mRNA_2965 0.11 -0.4
667,650 - 11333 mRNA_2965 0.34 -1.0
667,668 - 11333 mRNA_2965 0.34 -0.1
669,037 - 11333 mRNA_2965 0.83 +1.9
669,079 - 11333 mRNA_2965 0.84 -0.3
669,089 + 11333 mRNA_2965 0.85 -0.1
669,245 + -0.4
669,552 - +0.1

Or see this region's nucleotide sequence