Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2977

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11344 and 11345 are separated by 656 nucleotides11345 and 11346 are separated by 125 nucleotides mRNA_2976: 11344 - KOG2592 Tumor differentially expressed (TDE) protein, at 694,917 to 696,801 11344 mRNA_2977: 11345 - K05758 ARPC2 actin related protein 2/3 complex, subunit 2, at 697,458 to 698,969 11345 mRNA_2978: 11346 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 699,095 to 700,907 11346

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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696,957 - -0.7
697,009 - -1.1
697,245 - -0.1
697,251 + -2.9
697,255 - +1.0
697,258 + +0.6
697,259 - +2.1
697,261 + +2.5
697,267 + -0.1
699,011 + +2.0
699,167 + +0.3
699,187 + +0.0
699,300 - 11346 mRNA_2978 0.11 +1.1
699,305 - 11346 mRNA_2978 0.12 -0.5
699,305 - 11346 mRNA_2978 0.12 -0.4
699,342 - 11346 mRNA_2978 0.14 -0.0
699,375 + 11346 mRNA_2978 0.15 -0.3
699,460 - 11346 mRNA_2978 0.20 -1.3
699,478 - 11346 mRNA_2978 0.21 +0.5
699,481 - 11346 mRNA_2978 0.21 -0.2
699,487 + 11346 mRNA_2978 0.22 +0.2
699,617 - 11346 mRNA_2978 0.29 +0.2
699,804 - 11346 mRNA_2978 0.39 -0.5
699,822 - 11346 mRNA_2978 0.40 +0.7

Or see this region's nucleotide sequence