Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3012

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11379 and 11380 are separated by 429 nucleotides11380 and 11381 are separated by 331 nucleotides mRNA_3011: 11379 - K19177 NUS1 dehydrodolichyl diphosphate syntase complex subunit NUS1, at 71,270 to 72,413 11379 mRNA_3012: 11380 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 72,843 to 74,660 11380 mRNA_3013: 11381 - KOG1889 Putative phosphoinositide phosphatase, at 74,992 to 77,769 11381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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72,484 - +1.7
72,681 - +1.2
72,681 - +0.7
72,688 - +0.2
72,715 - -1.6
72,901 + +0.8
72,950 - +0.4
72,958 - -0.1
72,984 - +0.6
73,415 + 11380 mRNA_3012 0.31 +0.3
73,539 - 11380 mRNA_3012 0.38 +0.5
74,408 - 11380 mRNA_3012 0.86 +0.3
74,570 + +0.5
74,575 - +0.9
74,576 + +0.5
74,584 + -0.1
74,592 + +0.0
74,593 + +0.4
74,598 - +1.9
74,731 + -0.9
74,736 - +0.2
74,760 - +0.1
74,854 - +0.5
74,863 - +0.2
74,882 - -0.1
74,899 + -0.8
74,907 + +0.4
74,907 + -0.9
74,911 - -0.3
74,950 + -0.5
75,026 - +0.6

Or see this region's nucleotide sequence