Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3022

Experiment: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11389 and 11390 are separated by 355 nucleotides11390 and 11391 are separated by 252 nucleotides mRNA_3021: 11389 - K00697 otsA trehalose 6-phosphate synthase, at 115,343 to 117,642 11389 mRNA_3022: 11390 - K12394 AP1S1_2 AP-1 complex subunit sigma 1/2, at 117,998 to 118,989 11390 mRNA_3023: 11391 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 119,242 to 120,921 11391

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
117,458 + -2.9
117,604 - -1.0
117,607 + -1.7
117,612 - -1.4
117,750 - +1.2
117,755 + +0.1
117,758 - +1.7
117,763 - -0.0
117,763 - +0.1
117,763 - -1.6
117,769 - +0.4
117,783 - +0.1
117,793 - -0.5
117,793 - -0.5
117,794 + +0.4
117,794 + +2.2
117,794 + -0.4
117,796 + +0.6
117,797 - -0.8
117,797 + +0.4
117,797 - +1.0
117,800 - -0.3
117,801 + -0.5
117,804 + +0.9
117,914 - -0.2
117,916 - -0.8
117,922 - -0.0
117,924 - -0.1
117,925 + -0.0
117,947 - -0.3
117,948 + -0.0
117,953 - -1.3
117,954 - -0.7
117,957 - -0.4
118,244 - 11390 mRNA_3022 0.25 +0.9
118,967 + -0.2
118,990 - -0.3
118,994 - +0.3
119,110 - -0.6
119,260 - +0.7

Or see this region's nucleotide sequence