Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3023

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11390 and 11391 are separated by 252 nucleotides11391 and 11392 are separated by 155 nucleotides mRNA_3022: 11390 - K12394 AP1S1_2 AP-1 complex subunit sigma 1/2, at 117,998 to 118,989 11390 mRNA_3023: 11391 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 119,242 to 120,921 11391 mRNA_3024: 11392 - K20366 ERGIC2, ERV41 endoplasmic reticulum-Golgi intermediate compartment protein 2, at 121,077 to 122,686 11392

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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118,244 - 11390 mRNA_3022 0.25 +0.9
118,967 + -0.2
118,990 - -0.3
118,994 - +0.3
119,110 - -0.6
119,260 - +0.7
120,859 + -0.2
120,881 - +0.3
120,995 - +2.8
121,004 - -0.3
121,128 + +0.5
121,138 - -0.5
121,148 + -0.4
121,289 - 11392 mRNA_3024 0.13 -0.1
121,296 - 11392 mRNA_3024 0.14 -0.0
121,322 + 11392 mRNA_3024 0.15 -0.2
121,720 + 11392 mRNA_3024 0.40 +2.1
121,786 - 11392 mRNA_3024 0.44 -0.5
121,869 - 11392 mRNA_3024 0.49 +0.4

Or see this region's nucleotide sequence