Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3037

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11404 and 11405 are separated by 368 nucleotides11405 and 11406 are separated by 101 nucleotides mRNA_3036: 11404 - Hypothetical Protein, at 153,289 to 156,377 11404 mRNA_3037: 11405 - Hypothetical Protein, at 156,746 to 157,530 11405 mRNA_3038: 11406 - K19327 ANO10, TMEM16K anoctamin-10, at 157,632 to 160,610 11406

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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155,786 + 11404 mRNA_3036 0.81 +0.5
155,787 + 11404 mRNA_3036 0.81 -0.1
155,927 + 11404 mRNA_3036 0.85 -0.3
156,331 - +0.5
156,489 - +0.1
156,491 - -1.5
156,660 + -0.9
156,939 + 11405 mRNA_3037 0.25 +1.2
156,991 - 11405 mRNA_3037 0.31 -0.2
157,091 - 11405 mRNA_3037 0.44 -0.3
157,093 - 11405 mRNA_3037 0.44 -0.2
157,104 - 11405 mRNA_3037 0.46 +0.5
157,205 - 11405 mRNA_3037 0.58 +0.1
157,242 - 11405 mRNA_3037 0.63 -1.0
157,246 + 11405 mRNA_3037 0.64 +2.1
157,301 + 11405 mRNA_3037 0.71 +0.8
157,414 + 11405 mRNA_3037 0.85 +2.0
157,419 - 11405 mRNA_3037 0.86 -0.6
157,422 + 11405 mRNA_3037 0.86 -0.4
157,571 + +0.2
157,611 + +0.5
158,002 + 11406 mRNA_3038 0.12 -0.4
158,039 - 11406 mRNA_3038 0.14 -1.8
158,291 + 11406 mRNA_3038 0.22 +0.6

Or see this region's nucleotide sequence