Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3058

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11425 and 11426 are separated by 300 nucleotides mRNA_3057: 11425 - K02216 CHK1 serine/threonine-protein kinase Chk1, at 212,271 to 214,660 11425 mRNA_3058: 11426 - Hypothetical Protein, at 214,961 to 216,563 11426

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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213,989 - 11425 mRNA_3057 0.72 +0.4
213,994 + 11425 mRNA_3057 0.72 +0.4
214,072 + 11425 mRNA_3057 0.75 +0.8
214,224 - 11425 mRNA_3057 0.82 -0.1
214,238 - 11425 mRNA_3057 0.82 +0.1
214,243 + 11425 mRNA_3057 0.83 -0.1
214,523 + +0.5
214,665 + -0.1
214,696 + -0.1
214,932 + +0.5
214,987 + +1.2
214,988 + +1.2
215,019 + -0.8
215,262 - 11426 mRNA_3058 0.19 +0.6
215,363 - 11426 mRNA_3058 0.25 -0.9
215,509 + 11426 mRNA_3058 0.34 +2.0
215,589 - 11426 mRNA_3058 0.39 +0.7
215,589 - 11426 mRNA_3058 0.39 +0.8
215,589 - 11426 mRNA_3058 0.39 +0.9
215,589 - 11426 mRNA_3058 0.39 -0.1
215,595 + 11426 mRNA_3058 0.40 +0.2
215,643 + 11426 mRNA_3058 0.43 -0.4
215,766 + 11426 mRNA_3058 0.50 +1.0
215,766 - 11426 mRNA_3058 0.50 +0.7
215,839 - 11426 mRNA_3058 0.55 +0.9
215,842 - 11426 mRNA_3058 0.55 -0.8
215,866 + 11426 mRNA_3058 0.56 +0.0
215,905 - 11426 mRNA_3058 0.59 -1.4
216,117 + 11426 mRNA_3058 0.72 +0.2
216,133 - 11426 mRNA_3058 0.73 -0.0
216,179 - 11426 mRNA_3058 0.76 +1.5
216,189 - 11426 mRNA_3058 0.77 +0.8
216,191 - 11426 mRNA_3058 0.77 +0.9
216,234 - 11426 mRNA_3058 0.79 +0.1
216,271 - 11426 mRNA_3058 0.82 +0.8
216,345 - 11426 mRNA_3058 0.86 -0.1
216,395 - 11426 mRNA_3058 0.89 +1.3
216,443 + +0.7
216,446 - +1.1
216,449 + -0.2
216,569 + +0.7
216,570 + -0.4
216,674 + -1.0
216,742 + -0.1
216,837 - +2.3
216,865 - +0.8
216,868 - +0.2
216,879 + +0.3
216,882 + -0.4
216,884 - -0.4
217,004 + +0.3
217,009 - +0.5
217,011 - -0.8
217,029 - -0.7
217,032 + +2.9
217,035 - +0.7
217,037 + +0.4
217,038 + +2.0
217,045 - +1.5
217,152 - +2.3
217,173 + -0.1
217,193 + -0.0
217,252 - +1.3
217,317 + -0.0
217,461 - +1.5
217,464 + +0.7
217,470 - +0.8
217,470 - +0.1
217,475 + +0.4

Or see this region's nucleotide sequence