Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3066

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11433 and 11434 are separated by 294 nucleotides mRNA_3065: 11433 - Hypothetical Protein, at 230,805 to 232,101 11433 mRNA_3066: 11434 - K13449 PR1 pathogenesis-related protein 1, at 232,396 to 233,465 11434

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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231,459 - 11433 mRNA_3065 0.50 +0.5
231,461 - 11433 mRNA_3065 0.51 +1.5
231,465 - 11433 mRNA_3065 0.51 +0.4
231,467 + 11433 mRNA_3065 0.51 -1.3
231,468 + 11433 mRNA_3065 0.51 -0.2
231,489 + 11433 mRNA_3065 0.53 -0.5
231,592 + 11433 mRNA_3065 0.61 +1.3
231,632 + 11433 mRNA_3065 0.64 +0.8
231,752 + 11433 mRNA_3065 0.73 +0.2
231,758 + 11433 mRNA_3065 0.73 +1.0
231,764 + 11433 mRNA_3065 0.74 +0.3
231,771 + 11433 mRNA_3065 0.74 +0.6
231,778 - 11433 mRNA_3065 0.75 -0.2
231,780 - 11433 mRNA_3065 0.75 +0.5
231,783 + 11433 mRNA_3065 0.75 -0.8
231,911 - 11433 mRNA_3065 0.85 -1.7
231,924 + 11433 mRNA_3065 0.86 -1.3
231,927 + 11433 mRNA_3065 0.87 +0.8
231,948 + 11433 mRNA_3065 0.88 +1.4
232,071 - -0.5
232,072 - +0.4
232,086 + +0.6
232,178 - +0.2
232,205 - +0.6
232,227 - +2.4
232,384 - +0.4
232,516 - 11434 mRNA_3066 0.11 +0.3
232,656 + 11434 mRNA_3066 0.24 +0.4
232,659 - 11434 mRNA_3066 0.25 +0.4
232,951 - 11434 mRNA_3066 0.52 +0.3
232,952 - 11434 mRNA_3066 0.52 -0.7
233,123 - 11434 mRNA_3066 0.68 +2.8
233,207 - 11434 mRNA_3066 0.76 +1.8
233,430 + -0.2
233,546 - +0.8
233,573 - -0.0
233,713 + +0.2
233,788 - +0.6
233,817 + +0.3
233,827 + -0.0
233,828 - -0.8
233,829 - +1.0
233,837 + +0.8
233,844 + -0.1
233,853 - +0.4
233,854 + -0.8
233,865 - -0.6
233,865 - +1.8
233,899 + +0.5
233,937 - -1.0
233,940 - +2.2
233,943 + -1.9
233,947 - +0.9
233,948 - -0.2
233,949 - -0.2
233,951 - +1.0
233,952 - +0.0
233,956 - -1.8
233,957 + -2.3
233,966 - -0.0
233,968 - -1.2
233,968 - +1.1
233,969 - +2.0
233,971 + -0.3
233,971 + +0.6
233,972 - +0.5
233,979 - -0.2
233,986 + +0.0
234,005 - +0.4
234,010 + -0.1
234,013 + -0.1
234,018 - +1.4
234,021 + +0.5
234,024 - +2.3
234,035 - +0.1
234,069 - +0.5
234,069 - +0.2
234,080 - +0.7
234,082 - -0.5
234,086 - +0.5
234,095 - +0.3
234,097 - -0.2
234,109 + +1.8
234,109 - +0.1
234,118 - +1.3
234,121 + +1.9
234,126 - +0.3
234,132 - -0.5
234,148 - +2.0
234,157 + +0.1
234,250 - +0.4
234,271 - +2.5
234,314 + +0.4
234,413 - +0.5
234,424 - +0.5
234,453 - +0.2
234,455 - +0.2

Or see this region's nucleotide sequence