Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3074

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11440 and 11441 are separated by 153 nucleotides11441 and 11442 are separated by 45 nucleotides11442 and 11443 are separated by 218 nucleotides mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249,401 to 250,160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250,206 to 251,968 11442 mRNA_3075: 11443 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 252,187 to 260,484 11443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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249,406 + +1.0
249,430 + +3.6
249,552 + 11441 mRNA_3073 0.20 +0.9
249,695 + 11441 mRNA_3073 0.39 +2.0
249,696 - 11441 mRNA_3073 0.39 +2.5
249,701 + 11441 mRNA_3073 0.39 -0.3
249,762 - 11441 mRNA_3073 0.47 -0.2
249,822 - 11441 mRNA_3073 0.55 -0.5
249,841 + 11441 mRNA_3073 0.58 -0.9
249,845 + 11441 mRNA_3073 0.58 +0.6
249,858 + 11441 mRNA_3073 0.60 -0.1
249,860 + 11441 mRNA_3073 0.60 -1.3
249,861 + 11441 mRNA_3073 0.61 +0.7
249,898 + 11441 mRNA_3073 0.65 -0.3
249,927 - 11441 mRNA_3073 0.69 +1.2
249,978 + 11441 mRNA_3073 0.76 +0.3
249,983 - 11441 mRNA_3073 0.77 +1.4
250,002 + 11441 mRNA_3073 0.79 -2.6
250,015 + 11441 mRNA_3073 0.81 +0.6
250,017 - 11441 mRNA_3073 0.81 -1.2
250,017 - 11441 mRNA_3073 0.81 +0.4
250,030 - 11441 mRNA_3073 0.83 -0.4
250,132 + +0.8
250,137 - +0.5
250,138 + +0.6
250,143 + -0.5
250,166 - -0.7
250,283 - +1.8
250,290 - -1.1
250,302 + -1.4
250,304 + +0.2
250,327 - +1.3
250,478 + 11442 mRNA_3074 0.15 +2.6
250,597 - 11442 mRNA_3074 0.22 +1.1
250,619 - 11442 mRNA_3074 0.23 +0.1
250,730 + 11442 mRNA_3074 0.30 +1.5
250,851 - 11442 mRNA_3074 0.37 +0.1
250,852 + 11442 mRNA_3074 0.37 -0.4
250,868 - 11442 mRNA_3074 0.38 +1.4
250,879 + 11442 mRNA_3074 0.38 -1.7
250,986 + 11442 mRNA_3074 0.44 +0.4
251,009 + 11442 mRNA_3074 0.46 +0.7
251,073 - 11442 mRNA_3074 0.49 +0.0
251,113 + 11442 mRNA_3074 0.51 +0.9
251,138 - 11442 mRNA_3074 0.53 +1.4
251,156 + 11442 mRNA_3074 0.54 +0.2
251,443 - 11442 mRNA_3074 0.70 +3.0
251,570 - 11442 mRNA_3074 0.77 +0.3
251,577 + 11442 mRNA_3074 0.78 -0.7
251,720 + 11442 mRNA_3074 0.86 +0.4
251,734 - 11442 mRNA_3074 0.87 -0.6
251,738 + 11442 mRNA_3074 0.87 +2.3
251,739 + 11442 mRNA_3074 0.87 +0.1
251,739 - 11442 mRNA_3074 0.87 -0.5
251,761 + 11442 mRNA_3074 0.88 +1.6
251,833 + -0.5
251,853 - -0.5
251,854 + +0.1
251,867 + -0.3
251,869 + -0.5
251,879 + -0.1
251,891 + -0.7
251,896 - -0.3
251,980 - +1.1
251,981 + -0.6
251,988 - +0.6
252,011 + +0.5
252,031 - -0.3
252,043 + +1.0
252,043 + +0.2
252,051 - +0.4
252,054 + -0.6
252,054 + -0.5
252,057 - -0.8
252,073 - +0.0
252,176 - -0.1
252,176 - +0.2
252,205 - +1.6
252,342 + +0.0
252,437 + +0.2
252,453 + +0.3
252,501 + +2.4
252,541 + +1.2
252,647 - -0.5
252,653 + +0.2
252,777 + +3.5
252,914 + -0.1
252,917 + +1.4

Or see this region's nucleotide sequence