Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3082

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11449 and 11450 are separated by 386 nucleotides mRNA_3081: 11449 - KOG0446 Vacuolar sorting protein VPS1, dynamin, and related proteins, at 274,779 to 278,054 11449 mRNA_3082: 11450 - K09510 DNAJB4 DnaJ homolog subfamily B member 4, at 278,441 to 278,932 11450

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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277,595 + 11449 mRNA_3081 0.86 +1.1
277,644 + 11449 mRNA_3081 0.87 +0.1
277,673 + 11449 mRNA_3081 0.88 +0.3
277,681 - 11449 mRNA_3081 0.89 +0.8
277,797 + +1.3
277,797 - -0.4
277,824 + +0.4
277,835 - +0.3
277,836 + -0.5
277,842 + -0.9
277,933 - -0.2
277,960 - -1.4
277,981 + +0.2
277,985 + +1.2
278,083 - +0.1
278,105 - -0.3
278,108 + +1.6
278,135 - +0.5
278,138 + +0.6
278,246 - -1.2
278,263 - -1.3
278,264 - -1.6
278,293 + -0.0
278,402 + +1.5
278,557 - 11450 mRNA_3082 0.24 +1.0
278,558 - 11450 mRNA_3082 0.24 -0.7
278,565 + 11450 mRNA_3082 0.25 +1.2
278,568 - 11450 mRNA_3082 0.26 +2.0
278,704 + 11450 mRNA_3082 0.53 +0.7
278,871 + 11450 mRNA_3082 0.87 -0.3
278,986 - -0.6
278,990 - +0.1
279,127 - +1.9
279,146 + +0.1
279,147 + -0.4
279,149 + +0.5
279,160 + -0.9
279,335 + +1.6
279,423 + -0.3
279,427 + +0.4
279,433 - +0.5
279,447 - +0.2
279,452 + +1.7
279,458 + +0.8
279,482 + +0.4
279,566 - -0.0
279,570 + +0.3
279,573 + +0.5
279,577 + +0.5
279,579 - +0.1
279,596 - -0.2
279,600 + +0.1
279,611 + -0.3
279,629 + -0.3
279,696 + +0.0
279,703 + +3.0
279,735 + +0.4
279,741 + +0.1
279,749 - -0.1
279,754 - +1.9
279,756 - +1.6
279,768 - -0.4
279,786 - +1.2
279,837 + -0.3
279,847 - +0.8
279,853 - +2.0
279,870 - +0.3
279,874 - +0.5
279,874 - +1.1
279,877 + +0.5
279,881 - +1.6
279,892 + -0.5
279,894 + -0.5
279,896 - +0.2
279,904 + +0.7

Or see this region's nucleotide sequence