Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3085

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11453 and 11454 are separated by 731 nucleotides mRNA_3085: 11453 - K06269 PPP1C serine/threonine-protein phosphatase PP1 catalytic subunit, at 284,368 to 286,217 11453 mRNA_3086: 11454 - K03136 TFIIE1, GTF2E1, TFA1, tfe transcription initiation factor TFIIE subunit alpha, at 286,949 to 288,955 11454

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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283,419 - +0.3
283,531 + +1.2
283,534 + -0.1
283,545 + -1.1
283,545 + -1.3
283,547 - +0.6
283,563 + +1.0
283,580 + +0.8
283,710 + -0.5
283,826 - +1.8
283,827 + +0.1
283,844 + +2.3
283,854 + -1.2
283,858 + +0.0
283,858 + -0.7
283,860 - +0.9
283,861 + -0.3
283,863 - +0.5
283,864 + -1.1
283,865 + +0.5
283,869 - +0.7
283,995 + +0.1
283,996 - -0.9
284,003 + -1.4
284,012 + -0.3
284,017 + -0.5
284,047 + -1.2
284,134 + -0.7
284,141 - -0.5
284,143 - -0.4
284,148 + +0.1
284,167 + -0.2
284,170 - +1.3
284,171 + +0.4
284,222 + -0.5
284,282 + -1.2
284,302 - -0.1
284,309 + -0.2
284,321 + -1.0
284,324 + -1.3
284,326 + -0.3
284,331 - -1.2
284,331 - +1.1
284,331 - +0.1
284,331 + +0.1
284,332 - +0.0
284,340 + +1.3
284,444 + -0.3
284,451 - -1.5
284,452 + -0.8
284,454 - -0.9
284,465 - -0.7
284,474 + +0.1
284,477 - -0.1
284,481 - +0.5
284,605 + 11453 mRNA_3085 0.13 -1.7
284,752 + 11453 mRNA_3085 0.21 +0.7
284,905 - 11453 mRNA_3085 0.29 -0.7
284,917 - 11453 mRNA_3085 0.30 -0.1
285,035 - 11453 mRNA_3085 0.36 -0.3
285,040 - 11453 mRNA_3085 0.36 -0.1
285,172 + 11453 mRNA_3085 0.43 -0.6
285,452 - 11453 mRNA_3085 0.59 -0.7
285,558 - 11453 mRNA_3085 0.64 -1.6
285,595 - 11453 mRNA_3085 0.66 -0.1
285,666 + 11453 mRNA_3085 0.70 -0.7
285,739 + 11453 mRNA_3085 0.74 -1.3
285,744 - 11453 mRNA_3085 0.74 -0.2
286,039 + +1.5
286,151 + +0.7
286,335 + +0.1
286,455 - +0.1
286,462 - +0.3
286,608 - +0.1
286,614 + -0.7
286,614 - +0.3
286,616 - -0.4
286,754 - +0.3
287,058 - -0.1

Or see this region's nucleotide sequence