Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3142

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11510 and 11511 are separated by 81 nucleotides mRNA_3142: 11510 - K14663 NTA1 protein N-terminal amidase, at 414,641 to 415,857 11510 mRNA_3143: 11511 - K10133 TP53I3 tumor protein p53-inducible protein 3, at 415,939 to 417,358 11511

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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413,743 + +0.0
413,838 - +0.2
413,845 + -0.3
414,131 + -0.2
414,259 - +0.7
414,265 - +0.0
414,390 - -0.1
414,391 + +0.4
414,394 - -0.3
414,402 + +1.6
414,411 - +1.3
414,417 + +0.7
414,431 + +0.1
414,437 + +0.2
414,438 - -0.6
414,442 - -0.1
414,444 - -0.2
414,480 - -0.4
414,488 + +0.6
414,488 + -0.1
414,493 + +0.5
414,501 - +0.7
414,509 + +0.1
414,529 - -0.7
414,529 - +0.8
414,529 - +0.3
414,558 - +0.1
414,571 - +0.6
414,571 + +0.7
414,571 - +1.1
414,578 + +1.1
414,578 + -0.3
414,578 + -0.6
414,580 - +1.3
414,581 + +0.9
414,583 - -1.3
414,590 - +0.5
414,603 + +0.4
414,610 - +0.0
414,613 - -0.6
414,616 + +0.6
414,736 + +1.0
414,760 - +0.9
414,825 + 11510 mRNA_3142 0.15 -1.8
414,864 + 11510 mRNA_3142 0.18 -0.1
414,890 - 11510 mRNA_3142 0.20 +0.8
414,902 + 11510 mRNA_3142 0.21 +0.2
414,926 - 11510 mRNA_3142 0.23 -0.6
414,927 + 11510 mRNA_3142 0.24 +0.3
415,016 - 11510 mRNA_3142 0.31 -0.3
415,147 - 11510 mRNA_3142 0.42 +0.7
415,170 + 11510 mRNA_3142 0.43 +0.6
415,188 - 11510 mRNA_3142 0.45 -1.1
415,281 - 11510 mRNA_3142 0.53 +0.7
415,295 - 11510 mRNA_3142 0.54 +0.5
415,456 - 11510 mRNA_3142 0.67 -0.2
415,535 - 11510 mRNA_3142 0.73 +0.3
415,629 - 11510 mRNA_3142 0.81 -0.3
415,642 + 11510 mRNA_3142 0.82 +1.1
415,643 + 11510 mRNA_3142 0.82 +1.4
415,657 + 11510 mRNA_3142 0.83 -0.5
415,701 - 11510 mRNA_3142 0.87 -0.3
415,794 - +0.6
415,796 - +1.3
415,830 - -0.8
415,861 + -0.3
415,909 + +0.3
415,935 - -0.0
416,077 + +1.0
416,364 + 11511 mRNA_3143 0.30 +0.1
416,495 - 11511 mRNA_3143 0.39 -0.4
416,634 - 11511 mRNA_3143 0.49 +0.4
416,758 - 11511 mRNA_3143 0.58 -0.6
416,791 + 11511 mRNA_3143 0.60 +0.1
416,807 + 11511 mRNA_3143 0.61 +2.6

Or see this region's nucleotide sequence