Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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12 + +0.8
12 + +0.6
15 + +1.9
16 + +1.2
18 + -0.4
22 + +0.9
25 + +2.1
57 - -0.2
61 - +0.2
62 + -0.2
62 + +0.5
66 + +0.3
72 + -0.2
72 + -0.4
72 + -1.0
75 + +1.4
78 - +1.5
105 + +0.8
110 - -1.6
114 + -0.1
115 + -0.4
118 + +0.6
122 + -0.4
122 - +0.6
124 + +0.6
135 + +1.3
147 + -0.1
157 + +2.8
161 + +0.1
168 + -0.8
174 + +0.4
177 - -1.0
228 + -1.5
247 + +1.8
252 - -0.3
253 - +1.1
255 + -0.3
258 + -0.1
264 - +0.8
269 + +0.1
269 - +0.2
274 + -0.5
275 - +0.5
277 + +0.9
280 + -1.8
280 + +0.1
283 - -0.1
285 - +1.0
287 + -1.3
287 + +1.6
288 + +0.3
292 - -1.3
293 + +0.4
298 + -0.3
305 - +0.2
314 + -0.9
320 + -0.5
368 + +0.4
370 - +0.6
372 + +0.4
382 + +0.5
384 + +0.8
391 + +1.0
391 - -1.1
397 + +2.8
397 - +0.2
402 + +2.1
405 + +0.8
423 - -0.6
430 + +1.6
440 + +1.8
446 + -0.1
470 + +0.6
524 + -0.7
532 + +0.1
545 - +1.9
557 + +0.9
569 + +1.1
570 - +1.3
583 + +0.1
584 + +1.6
603 - +0.3
603 + +0.1
634 - 11537 mRNA_3169 0.11 +0.8
636 + 11537 mRNA_3169 0.11 +0.9
646 + 11537 mRNA_3169 0.12 +0.2
661 + 11537 mRNA_3169 0.13 +0.4
667 + 11537 mRNA_3169 0.14 +0.4
698 + 11537 mRNA_3169 0.17 -0.0
704 - 11537 mRNA_3169 0.18 -0.6
705 - 11537 mRNA_3169 0.18 +2.4
721 - 11537 mRNA_3169 0.19 +0.2
725 + 11537 mRNA_3169 0.20 +0.6
738 - 11537 mRNA_3169 0.21 +0.0
849 + 11537 mRNA_3169 0.32 +0.0
871 + 11537 mRNA_3169 0.34 -1.5
883 + 11537 mRNA_3169 0.35 +2.1
894 + 11537 mRNA_3169 0.37 -0.5
895 + 11537 mRNA_3169 0.37 -0.1
922 + 11537 mRNA_3169 0.39 +0.9
965 - 11537 mRNA_3169 0.44 -0.3
1,012 - 11537 mRNA_3169 0.48 +0.9
1,026 + 11537 mRNA_3169 0.50 -0.5
1,026 + 11537 mRNA_3169 0.50 -0.2
1,105 + 11537 mRNA_3169 0.58 -0.2
1,123 + 11537 mRNA_3169 0.60 +0.7
1,141 + 11537 mRNA_3169 0.61 -0.1
1,142 + 11537 mRNA_3169 0.61 +1.7
1,165 + 11537 mRNA_3169 0.64 +0.9
1,174 - 11537 mRNA_3169 0.65 +1.0
1,174 + 11537 mRNA_3169 0.65 +2.2
1,259 + 11537 mRNA_3169 0.73 +1.3
1,265 + 11537 mRNA_3169 0.74 +0.4
1,268 + 11537 mRNA_3169 0.74 +0.9
1,269 - 11537 mRNA_3169 0.74 -0.8
1,288 - 11537 mRNA_3169 0.76 -0.7
1,297 + 11537 mRNA_3169 0.77 -1.5
1,303 - 11537 mRNA_3169 0.78 +0.2
1,399 + 11537 mRNA_3169 0.87 +0.3
1,412 - 11537 mRNA_3169 0.88 -0.3
1,419 - 11537 mRNA_3169 0.89 -0.0
1,423 - 11537 mRNA_3169 0.90 -2.3
1,429 - +0.3
1,453 + -0.3
1,459 + +0.8
1,459 + +0.1
1,460 - -0.9
1,461 + -1.3
1,462 + +0.8
1,467 + +0.1
1,470 - +0.1
1,474 - -0.5
1,485 + +0.4
1,520 + -0.6
1,523 + +0.5
1,531 - +1.2
1,537 + -0.0
1,541 + +1.6
1,562 + +1.3
1,567 + -0.1
1,572 + -0.3
1,582 - -0.0
1,584 - +0.9
1,589 + -0.9
1,596 - -0.4
1,601 - -0.3
1,602 + -0.5
1,605 + +1.8
1,609 + +0.9
1,616 + -0.2
1,636 + +1.5
1,654 + +0.4
1,656 - +0.7
1,666 + -0.0
1,675 - +1.5
1,682 - -0.3
1,697 - +0.5
1,709 + -1.1
1,709 - +0.8
1,711 + +0.2
1,718 - +1.5
1,719 + +0.1
1,722 - -0.2
1,723 + +0.1
1,725 - -0.5
1,725 - -0.2
1,727 + -1.1
1,730 + -0.3
1,731 + +0.4
1,732 + +2.2
1,732 + -0.3
1,734 + -0.5
1,734 + +0.2
1,734 + -0.3
1,739 - +0.6
1,740 + +2.4
1,744 - -0.4
1,747 + -0.0
1,749 + +0.3
1,759 + +0.3
1,759 + +0.5
1,759 + +1.5
1,761 + +0.9
1,763 + -0.5
1,765 + -0.4
1,767 + +2.7
1,769 + +0.7
1,772 + -0.4
1,772 + +1.2
1,774 + +0.5
1,774 + -0.6
1,775 + +0.4
1,776 - +1.5
1,776 + +1.3
1,777 + +1.3
1,778 + +1.4
1,778 - +0.2
1,781 - +1.5
1,783 - +0.8
1,783 - +1.3
1,783 - +0.7
1,783 - +1.4
1,784 + +0.1
1,789 + +2.7
1,789 - +0.3
1,791 + -0.3
1,792 + -0.3
1,793 + +1.9
1,795 + -0.2
1,796 + -0.3
1,796 - +0.8
1,798 + +0.7
1,800 + -0.1
1,801 + -0.1
1,805 + +0.0
1,805 + +1.1
1,807 + +0.7
1,813 - +0.4
1,814 + +0.3
1,814 + +1.1
1,818 - +0.9
1,851 - +0.8
1,874 + +0.3
1,881 - -0.1
1,885 - +0.4
1,891 - -0.8
1,896 - +1.5
1,912 + +0.9
1,912 + +1.1
1,914 - +0.3
1,916 - -0.8
1,917 - +1.6
1,919 + -0.4
1,922 - +2.4
1,923 - +1.4
1,934 - +0.7
1,935 + +0.1
1,938 - +0.5
1,938 - +0.3
1,940 - +1.9
1,941 + +0.5
1,941 + +0.2
1,942 + -0.0
1,943 - -0.9
1,944 + +0.0
1,944 - +0.3
1,945 - +1.6
1,945 + +0.4
1,946 - +0.4
1,947 + +1.0
1,960 - +0.4
1,968 + +1.0
1,980 + +2.6
2,015 + -0.0
2,067 - +1.9
2,081 - +1.0
2,091 + +1.6
2,220 + -0.1
2,229 - +1.9
2,235 - +0.4
2,237 - +1.2
2,242 + -0.4
2,242 - +0.6
2,245 - +2.8
2,248 - +0.4
2,251 + +2.0
2,254 - +0.1
2,261 + +0.2
2,262 - +0.1
2,266 + +2.1
2,268 + +0.3
2,400 + 11538 mRNA_3170 0.21 -0.3
2,401 - 11538 mRNA_3170 0.21 +1.3
2,404 + 11538 mRNA_3170 0.22 -0.3
2,414 + 11538 mRNA_3170 0.23 +2.3
2,420 - 11538 mRNA_3170 0.23 +2.0
2,439 + 11538 mRNA_3170 0.25 +1.1
2,446 + 11538 mRNA_3170 0.26 +2.8
2,470 - 11538 mRNA_3170 0.28 +1.5
2,516 - 11538 mRNA_3170 0.32 -0.8

Or see this region's nucleotide sequence