Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3193

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11560 and 11561 are separated by 270 nucleotides mRNA_3192: 11560 - HMMPfam-Hypothetical protein FLILHELTA-PF10306, at 53,069 to 53,726 11560 mRNA_3193: 11561 - K13116 DDX41, ABS ATP-dependent RNA helicase DDX41, at 53,997 to 56,662 11561

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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53,157 + 11560 mRNA_3192 0.13 +0.9
53,366 + 11560 mRNA_3192 0.45 -0.1
53,508 + 11560 mRNA_3192 0.67 -0.2
53,523 + 11560 mRNA_3192 0.69 +0.8
53,635 - 11560 mRNA_3192 0.86 -0.6
53,781 - +1.0
53,794 + +1.2
53,901 - +0.7
53,932 + +0.1
53,938 - -0.6
53,944 - -0.1
53,946 - +0.1
53,947 + +2.5
53,949 + -0.0
53,952 + -1.1
56,748 + +0.1
56,859 - -0.7
56,869 + +1.1
56,873 + +2.0
56,890 - +0.8
56,962 + -0.2
56,973 + -0.2
57,019 - +1.5
57,256 - +4.1
57,257 + +0.4
57,266 - +1.1
57,287 - +0.1
57,296 - +0.2
57,299 - +0.3
57,301 - -1.4
57,306 + +0.1
57,330 + +0.6
57,481 + +0.1
57,541 - +0.4
57,541 - -1.2
57,542 + +1.1
57,570 - +1.0
57,606 + -0.0

Or see this region's nucleotide sequence