Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3213

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11580 and 11581 are separated by 262 nucleotides11581 and 11582 are separated by 398 nucleotides mRNA_3212: 11580 - BLAST related to TRX2-thioredoxin II [Melanopsichium pennsy..., at 104,334 to 106,276 11580 mRNA_3213: 11581 - HMMPfam-Tubulin domain-PF14881,SUPERFAMILY--SSF52490, at 106,539 to 109,229 11581 mRNA_3214: 11582 - KOG3989 Beta-2-glycoprotein I, at 109,628 to 110,560 11582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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105,705 + 11580 mRNA_3212 0.71 +1.4
105,709 + 11580 mRNA_3212 0.71 -1.4
105,858 - 11580 mRNA_3212 0.78 +1.1
106,009 - 11580 mRNA_3212 0.86 -0.9
106,036 - 11580 mRNA_3212 0.88 -0.7
106,159 + -0.1
106,164 - +2.9
106,168 + -0.4
106,180 - -0.4
106,183 - -0.4
106,313 - -0.9
106,318 - +2.2
106,318 - +1.0
106,318 + +0.2
106,322 - -1.2
106,327 + +0.2
106,327 + -0.1
106,362 + +1.8
106,363 - -1.7
106,536 + +0.2
107,974 + 11581 mRNA_3213 0.53 +0.1
109,466 - +2.6
109,495 - -0.7
109,909 + 11582 mRNA_3214 0.30 -0.8

Or see this region's nucleotide sequence