Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3254

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11621 and 11622 are separated by 176 nucleotides11622 and 11623 are separated by 400 nucleotides mRNA_3253: 11621 - KOG1201 Hydroxysteroid 17-beta dehydrogenase 11, at 218,422 to 220,105 11621 mRNA_3254: 11622 - K12161 URM1 ubiquitin related modifier 1, at 220,282 to 220,812 11622 mRNA_3255: 11623 - K01711 gmd, GMDS GDPmannose 4,6-dehydratase, at 221,213 to 223,248 11623

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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219,378 - 11621 mRNA_3253 0.57 -0.0
219,662 - 11621 mRNA_3253 0.74 +0.8
219,840 - 11621 mRNA_3253 0.84 -1.1
219,997 + +1.3
220,124 + -0.7
220,728 + 11622 mRNA_3254 0.84 -0.6
220,855 + +0.6
220,874 - -0.0
220,883 - +0.4
220,892 + -0.7
220,981 - +1.0
221,012 - -0.1
221,024 - +1.6
221,027 - +0.5
221,285 - +1.5
221,473 + 11623 mRNA_3255 0.13 +1.5

Or see this region's nucleotide sequence