Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3278

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11645 and 11646 are separated by 244 nucleotides11646 and 11647 are separated by 733 nucleotides mRNA_3277: 11645 - K14835 NOP2 ribosomal RNA methyltransferase Nop2, at 269,606 to 272,171 11645 mRNA_3278: 11646 - K14152 HIS4 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase / histidinol dehydrogenase, at 272,416 to 277,579 11646 mRNA_3279: 11647 - HMMPfam-Beta-glucan synthesis-associated protein (SKN1)-PF03935,SUPERFAMILY--SSF49899, at 278,313 to 280,858 11647

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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274,223 + 11646 mRNA_3278 0.35 -0.3
274,224 - 11646 mRNA_3278 0.35 +0.8
274,239 + 11646 mRNA_3278 0.35 -0.5
274,258 + 11646 mRNA_3278 0.36 +0.8
274,260 + 11646 mRNA_3278 0.36 +0.8
274,719 + 11646 mRNA_3278 0.45 +1.9
274,828 - 11646 mRNA_3278 0.47 -0.3
274,832 - 11646 mRNA_3278 0.47 -0.8
274,833 - 11646 mRNA_3278 0.47 -0.3
274,848 - 11646 mRNA_3278 0.47 +0.4
274,994 - 11646 mRNA_3278 0.50 +0.9
275,118 + 11646 mRNA_3278 0.52 +1.8
275,435 - 11646 mRNA_3278 0.58 +0.1
275,437 - 11646 mRNA_3278 0.59 -0.1
276,140 - 11646 mRNA_3278 0.72 -0.0
276,184 - 11646 mRNA_3278 0.73 +0.7
276,309 - 11646 mRNA_3278 0.75 -0.3
276,723 - 11646 mRNA_3278 0.83 +1.0
277,751 - -0.3
277,752 - +1.0
277,752 + -0.0
278,107 + +0.1
278,320 - +1.9
278,335 + -0.1

Or see this region's nucleotide sequence