Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3309

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11676 and 11677 are separated by 603 nucleotides mRNA_3308: 11676 - KOG2533 Permease of the major facilitator superfamily, at 357,667 to 359,935 11676 mRNA_3309: 11677 - HMMPfam-Amidohydrolase family-PF01979,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 360,539 to 362,421 11677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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359,848 + -0.6
359,853 - +0.4
359,857 - -0.9
360,014 - +0.1
360,017 + +1.6
360,057 - -0.4
360,103 + -0.6
360,115 - +0.1
360,117 - -1.0
360,132 + +0.2
360,136 - -0.2
360,136 + +0.6
360,136 - -0.5
360,140 - +1.3
360,143 - +1.1
360,147 + -0.5
360,153 + -0.2
360,164 + +1.4
360,165 - +2.8
360,169 - +0.7
360,170 - -0.3
360,182 + +1.0
360,182 + +0.5
360,197 + -0.0
360,203 - +0.2
360,217 + +0.4
360,356 + +0.8
360,370 - +0.5
360,371 + +2.0
360,378 + +0.3
360,395 - +1.4
360,398 + -0.3
360,413 + -1.4
360,426 - -1.6
360,426 - +0.2
360,427 - +1.5
360,428 + -0.1
360,428 - -0.7
360,432 - +0.1
360,433 - +0.4
360,434 - -0.1
360,437 + -1.6
360,437 - +1.9
360,437 - +3.4
360,440 + +0.0
360,446 + +0.4
360,447 - +0.4
360,448 - +0.4
360,454 - +1.2
360,461 + -0.0
360,463 - +0.4
360,466 - -0.8
360,471 + +0.3
360,471 + +1.3
360,475 - -0.1
360,486 + +0.5
360,489 + +0.1
360,507 + +1.0
360,563 - +1.2
360,608 - +1.3
360,609 - -1.0
360,612 - +0.8
360,637 - +0.3
360,751 - 11677 mRNA_3309 0.11 +1.2
360,763 + 11677 mRNA_3309 0.12 +0.2
360,911 + 11677 mRNA_3309 0.20 -0.8
361,230 + 11677 mRNA_3309 0.37 -0.9
361,607 + 11677 mRNA_3309 0.57 +1.7
361,786 - 11677 mRNA_3309 0.66 +1.1
361,915 + 11677 mRNA_3309 0.73 -0.3
361,939 - 11677 mRNA_3309 0.74 +0.1
362,074 - 11677 mRNA_3309 0.82 +0.0
362,206 + 11677 mRNA_3309 0.89 +0.7
362,353 + -0.2
362,503 - -0.4
362,507 + +1.7
362,659 - -0.1
362,666 + +2.1
362,999 + +0.1
363,130 - +1.1
363,137 + -1.7
363,418 - -0.4
363,420 - +0.1

Or see this region's nucleotide sequence