Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3310

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11678 and 11679 are separated by 139 nucleotides mRNA_3310: 11678 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 363,759 to 365,853 11678 mRNA_3311: 11679 - K00134 GAPDH, gapA glyceraldehyde 3-phosphate dehydrogenase, at 365,993 to 367,448 11679

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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362,999 + +0.1
363,130 - +1.1
363,137 + -1.7
363,418 - -0.4
363,420 - +0.1
363,479 + +2.1
363,547 + -0.9
363,583 - -0.6
363,694 - -0.1
363,847 + -0.2
363,938 - -0.1
364,080 + 11678 mRNA_3310 0.15 +1.4
364,134 + 11678 mRNA_3310 0.18 +0.5
364,172 + 11678 mRNA_3310 0.20 -1.0
364,224 - 11678 mRNA_3310 0.22 -0.1
364,399 - 11678 mRNA_3310 0.31 -0.6
364,401 + 11678 mRNA_3310 0.31 -0.1
364,407 - 11678 mRNA_3310 0.31 +1.2
364,408 + 11678 mRNA_3310 0.31 +2.0
364,410 - 11678 mRNA_3310 0.31 -0.3
364,541 - 11678 mRNA_3310 0.37 -0.5
364,826 - 11678 mRNA_3310 0.51 +1.6
364,833 - 11678 mRNA_3310 0.51 +0.6
364,854 + 11678 mRNA_3310 0.52 -0.5
365,271 - 11678 mRNA_3310 0.72 -0.5
365,734 + -1.2
366,051 + +0.1
366,104 + +0.1
366,354 + 11679 mRNA_3311 0.25 +0.8
366,431 + 11679 mRNA_3311 0.30 +0.6
366,434 - 11679 mRNA_3311 0.30 +0.2
366,474 - 11679 mRNA_3311 0.33 -0.2

Or see this region's nucleotide sequence