Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3325

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11692 and 11693 are separated by 176 nucleotides11693 and 11694 are separated by 825 nucleotides mRNA_3324: 11692 - HMMPfam-RTA1 like protein-PF04479, at 397,238 to 398,541 11692 mRNA_3325: 11693 - Hypothetical Protein, at 398,718 to 399,832 11693 mRNA_3326: 11694 - BLAST allergen [Malassezia sympodialis ATCC 42132], at 400,658 to 402,328 11694

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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397,723 - 11692 mRNA_3324 0.37 -0.1
398,171 - 11692 mRNA_3324 0.72 -1.1
398,741 - +1.3
398,864 - 11693 mRNA_3325 0.13 -1.5
398,894 + 11693 mRNA_3325 0.16 +1.0
399,917 - +1.0
399,930 - +0.9

Or see this region's nucleotide sequence